Gene detail

Gene detail information of Glyur000263s00013588.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G34200.1	0	D-3-phosphoglycerate dehydrogenase
NR	XP_004496955.1	0	PREDICTED: d-3-phosphoglycerate dehydrogenase, chloroplastic-like isoform X1 [Cicer arietinum]
COG	YP_005442157.1	2.00E-144	D-3-phosphoglycerate dehydrogenase [Caldilinea aerophila DSM 14535 = NBRC 104270]
Swissprot	tr\|O49485\|SERA1_ARATH	0	D-3-phosphoglycerate dehydrogenase 1, chloroplastic (Precursor)
trEMBL	tr\|I1LEI9\|I1LEI9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G40750.1}

Sequence

Transcript Sequence

>Glyur000263s00013588.1
CTCATTCATAAACCCTGTATCTGTATGTGACTGTGGGCATTCATTATAGCTTTANAAGACCCCTCCCACAACAAAACAACCAACCCCGGTTTGTTTGAAAAAACTTGCTACTTCCACTTCCTATTTCCCACTCACTGTCACTTCACTCACTCACAGCAAGCNAACATGGCCGCTAACGCAACTTCCCAAACCCTTCGAATTCCGTCGCTGTCGCTCTCATCATCGAAGCTCCCTCTCTCCTCGGCCTTCTCCGTGTCCCTCCGCCCNCGCCGCCGCAGCGCCCGCCCCCTCGTGGTGGTGGTCTCCGCCGGTCTCGACGCCAAGCCGACGGTGCTGGTGGCGGAGAAGCTGGGTGAGGCGGGGCTGAAGCTGCTNAAGGACTTCGCGAACGTGGACTGCTCCTACAACCTGAGCGCGGAGGAGCTGTGCACGAAGATCTCACTCTGCGACGCCCTCATCGTCCGTAGCGGCACCAAGGTCACCCGCGAGGTNTTCGAGTCCTCCGCCGGAAGGCTCAAGGTCGTTGGAAGAGCCGGCGTCGGAATCGACAACGTGGATCTAGCCGCCGCCACCGAGCACGGCTGCCTCGTCGTTAATGCCCCCACCGCCAACACCGTCGCCGCCGCCGAGCACGGGATCGCGCTCCTCGCCGCCATGGCCAGGAACGTCGCTCAGGCCGATGCCTCNGTCAAAGCTGGGAAGTGGCAGAGGAATAAGTATGTTGGGGTTTCCCTGGTTGGGAAGACACTTGCTGTCATGGGATTTGGGAAGGTTGGTTCTGAGGTTGCTCGGCGTGCTAAGGGGCTTGGTATGCACGTCATTGCACATGACCCTTACGCTCCTGCTGATCGTGCTCGTGCTATTGGTGTGGAGCTTGTGAGCTTTGATGAGGCCATTGCCACTGCAGATTTCATCTCCCTTCACATGCCCCTCACCCCTGCTACGTCCAAGATGCTCAATGATGAGACTTTTGCCAAGATGAAGAAAGGGGTTCGAATTGTCAATGTTGCTCGTGGTGGAGTCATCGATGAGGATGCACTTGTTAGAGCACTGGATTCTGGGATTGTAGCTCAGGCGGCTCTTGATGTTTTCACGGTGGAACCACCCGCAAAAGACAGCAAGTTGATTCTGCATGAGCAAGTTACTGCAACACCTCATCTTGGTGCCAGTACCATGGAAGCTCAGGAAGGTGTGGCTATTGAAATAGCAGAAGCTGTCGTTGGGGCGTTGAAAGGTGAGCTTGCTGCTACTGCCGTCAATGCACCAATGGTTCCCTCAGAGGTGTTAAATGAGCTAAAACCATTCGTTGATCTTGCTGAGAAACTGGGGAGGCTTGCCGTCCAACTGGTAGCGGGGGGAAGCGGAGTAAAAACAGTGAAAGTGACCTATGCTTCCTCAAGGGCCCCTGATGATCTTGACACTCGTCTTATTCGTGCTATGATAACAAAGGGTCTGATTGAGCCCATATCCAGTGTTTTTGTGAACTTGGTTAATGCTGATTTCACTGCAAAACAAAGAGGGCTGAGAATAACGGAGGAGAGAGTCATTCTTGATGGGTCGCCTGAGAATCCACTTGAATTCATCCAGGTCCAGATTGCTAATGTGGAATCCCGATTTGCTAGCGCCATATCAGACTCTGGGGAGATTACGGTTGAGGGTAGGGTGAAAGATGGCATCCCCCATTTGACAAAGGTTGGATCTTTTGAAGTTGATGTGACTTTGGAAGGTAGCATTATCCTCTGCAGGCAGGTTGATCAACCAGGTATGATCGGAACGGTGGGTAGCATTTTGGGTCAGGAGAATGTGAATGTNAGCTTCATGAGTGTAGGAAGGATTGCACCACGCAAGCAAGCTGTGATGGCAATTGGAGTGGACGATCAACCTAAAAAAGAAACTTTGAAGAAGATTGGAGACATTCCTGCCATTGAAGAATTCGTTTTCTTGAAGTTGTAAGATGAAATGGTTGTCTCCCCCCCCCCCCCCCCTTTTCTTTTCTTTTCTTTTCTTTTTCTTTTTCTTTCAAGTTGTGGATTGGGCATGACTGCCGGATGTGCCCGGTTTTGATGCATCATCAAATGAGTGTAGCGAGTATTATTAGGGGGACGAGGAAAGGAATAATTTTGCTTTGCAACGAATAGTGTGGTTTAGTGTGGTATTGCTTGTTCAATTCACTTTTTTTTATTTGAAATAAAATAGAATAAAAACATGTCCGAAATTTCAAATAATTACTTCCAAATATCTTTTAAGACTTGATTGTAATTTTATTCCTTCTCTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00263	171694	174973	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00058	serA, PHGDH	EC:1.1.1.95	Carbon metabolism	map01200
			Biosynthesis of amino acids	map01230
			Methane metabolism	map00680
			Glycine, serine and threonine metabolism	map00260

Gene Ontology

biological_process

GO:0006564 L-serine biosynthetic process

GO:0008152 metabolic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0004617 phosphoglycerate dehydrogenase activity

GO:0016597 amino acid binding

GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

GO:0051287 NAD binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000263s00013588.1	PF00389.25	2-Hacid_dh	56	365	6.70E-35
Glyur000263s00013588.1	PF02826.14	2-Hacid_dh_C	158	333	9.60E-62
Glyur000263s00013588.1	PF01842.20	ACT	524	584	3.30E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	109.204
SRR1783600	control	109.464
SRR1783602	moderate drought stress	88.242
SRR1811619	moderate drought stress	87.872

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	112.529
DRR006520	Root Summer glycyrrhizin high producing strain	111.378
DRR006521	Root Winter glycyrrhizin high producing strain	272.455
DRR006522	Root Winter glycyrrhizin high producing strain	266.277
DRR006523	Root Summer glycyrrhizin low producing strain	78.959
DRR006524	Root Summer glycyrrhizin low producing strain	78.675
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.529
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.435

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	127.551
SRR2868004	Drought Stress (root)	65.051
SRR2967015	Control (root)	57.159

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.479
SRR9715740	Leaf	18.266
SRR9715741	Leaf	25.137
SRR9715739	Root	109.515
SRR9715742	Root	225.694
SRR9715743	Root	201.347

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	134.806
SRR8749028	MeJA induced 9h	279.390
SRR8749029	MeJA induced 9h	271.067
SRR8749030	Uninduced	73.901
SRR8749031	Uninduced	23.616
SRR8749032	Uninduced	100.365

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	157.377
SRR8400027	Control - Root	138.076