Gene detail

Gene detail information of Glyur000263s00013583

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G15320.1	2.00E-97	Leucine-rich repeat (LRR) family protein
NR	KEH44118.1	0	LRR receptor-like kinase family protein [Medicago truncatula]
COG	YP_004775215.1	5.00E-29	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q8GT95\|PGIP1_ORYSJ	1.00E-32	Polygalacturonase inhibitor 1 (Precursor)
trEMBL	tr\|A0A072VRP7\|A0A072VRP7_MEDTR	0	LRR receptor-like kinase family protein {ECO:0000313\|EMBL:KEH44118.1}

Sequence

Transcript Sequence

>Glyur000263s00013583.1
ATGCCAAACCTCGTATTCCTCTGCCTAACTATTACTATTTGCCTTTCAACGTTTCACCTTCAAAGGAACAATTTACATGTGCAAGCCCTGACTTCAGCCTCAGACATTGCAGNCCTGAAGGCCTTCAAAGCCTCAATCAAACCCTCTTCCATCACACCCTGGTCATGCCTAGCATCATGGAACTTCACCACTGATCCCTGCTCAGTCCCTCACCGCACCCACTTCACCTGCGGCTTCACCTGCACCCCTGATTCCACACGCATCAACCAAATCACCCTCGACCCTGCAGGCTACTCGGGCACACTCACCCCACTCATCTCTCAACTCACCCAACTCACCACACTGGACCTCTCCGATAACTCTTTCTTTGGCCCAATCCCTTCTTCACTCTCTTCCCTTTCCAACCTCCGAACCTTAACCCTCCGATCCAATTCCTTCTCGGGTTCAATCCCTCCCTCCATAACCACCCTCAAGTCCCTCGAATCTCTCGACCTTTCACACAATTCCCTATCTGGGTCTCTCCCAAACTCCATGAATTCCCTCACCACACTGCGCAGAATCGATCTCAGCTTCAACAAGCTAACCGGTTCGATCCCCAGGCTTCCACCCAACTTGCTAGAACTCGCACTCNAGGCCAATTCTCTATCTGGGCCTCTCCAAAAACGAACCTTTGAGGGGTTGAACCAGTTGGAGGTGGTGGAGTTAAGCGAGAACGCACTCGCCGGAACGATAGAATCGTGGTTCTTCCTCTTGCCGTCGCTGCAGCAAGTGGATTTGGCCAATAACAGCTTCACGGGGGTTCAGATCTCGAGACCCTCGGGTGGGAGCGATTTGGTGGCACTGAACNTCGGATTTAACAGAATCCAAGGTTACGCGCCCGCGAATCTCGCCGCGTATCCGCTACTGTCGTTCCTGTCGATTCGCCACAACTCGCTACGTGGCAACATCCCATTGGAGTACGGCCAGATCAAGTCTATGAAGAGGCTGTTCTTGGACGGAAACTTCCTCGTCGGGAAGCCGCCGCCGGGGTTGTTCGCCGCCGGCGCNACGGTTTCCGGTAGCTTGGGGGACAATTGTCTGCAGGGTTGTCCGGTTTCTTCACAGCTGTGCGCGCCTACACAGAAACCCAGCTCTATTGTTCGGGTTTGGAATAAGTTGCCGGGTCTTGAATTCTGGTCTTTGGGCAATGGCACAGCTGTTAATATTTGGAATGATTCTTGGATAGAGCCTGGGCTTGTGCTGCGTAATTTTGATATTTCTATTCCTGCTGATATGGAGCATTTCCATGTTAATGATCTTGTGGGGTTAAATGGGGAGTGGGATTTTTCTGTTTTGCAGGTTGTTGTTCCAGCTGACATTTTGGGCAAGGTGAAGGCTGTTTTGCCTCCTTCTGATGCAGATGGGGAGGACCAGCGATTATGGGCATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00263	149359	152408	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000263s00013583.1	PF00560.28	LRR_1	111	133	0.043
Glyur000263s00013583.1	PF13855.1	LRR_8	134	194	1.80E-08
Glyur000263s00013583.1	PF13855.1	LRR_8	203	263	3.60E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	99.134
SRR1783600	control	100.139
SRR1783602	moderate drought stress	100.889
SRR1811619	moderate drought stress	101.419

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	51.474
DRR006520	Root Summer glycyrrhizin high producing strain	49.988
DRR006521	Root Winter glycyrrhizin high producing strain	38.901
DRR006522	Root Winter glycyrrhizin high producing strain	38.196
DRR006523	Root Summer glycyrrhizin low producing strain	28.032
DRR006524	Root Summer glycyrrhizin low producing strain	28.399
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.639
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.227

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.514
SRR2868004	Drought Stress (root)	18.816
SRR2967015	Control (root)	16.420

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.861
SRR9715740	Leaf	12.590
SRR9715741	Leaf	8.805
SRR9715739	Root	66.603
SRR9715742	Root	46.488
SRR9715743	Root	42.673

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.018
SRR8749028	MeJA induced 9h	8.227
SRR8749029	MeJA induced 9h	10.384
SRR8749030	Uninduced	0.579
SRR8749031	Uninduced	0.330
SRR8749032	Uninduced	1.298

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.132
SRR8400027	Control - Root	20.073