Gene detail

Gene detail information of Glyur000263s00013580

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G35220.1	1.00E-98	Cyclase family protein
NR	XP_004496961.1	2.01E-154	PREDICTED: kynurenine formamidase-like [Cicer arietinum]
COG	YP_004672711.1	2.00E-37	cyclase family protein [Simkania negevensis Z]
trEMBL	tr\|A0A072VR08\|A0A072VR08_MEDTR	5.00E-144	Kynurenine formamidase-like protein {ECO:0000313\|EMBL:KEH44121.1}

Sequence

Transcript Sequence

>Glyur000263s00013580.1
ACACAGAAGTCAACCTTCAGATTAAACCTCTAAAGNCTCAATCAACAAAAATACCGAAAACAAATCGTGTGGAATTATCAGACAGTGTGACTGTGGGTAGAAAAGCGGAAGGGGGGAGAGGAGACATTGTAACACGAACAAGAAGCTCATCATTATCAAAGCATGAAATCTCTCTGTCTATTTGCGTTTCTCTGTGCAGTTTCCGTGGCCGCAGCCAACACGGCCTATCCTTCCGTCCCCGGCATCGATTCCGGTGAATGCTCCCTCGCCGGCGACGACGGTATTCTTGTACCTCCACGGCGAGAAGTCTACGATGACGGGAAAATCTTCGATATCAGCCACAGGTACGTCTCTGAGATGCCGGTGTGGGACTCGGAGGAGGGACTAGGGCACTTCCTGTGGCTGGCGAAGAGCATGAAGAATGGCTCACGCGCTAATAACTCCGCCATGAAGCTGGGTGCTCACACCGGCACTCATGTTGACGCGCCCAGCCACTTCTACGACAATTACTTCGACGCNGGATTCGACGTAGATACGCTCGACTTACGAGTACTCAATGGCCTTGCTCTTTTGGTNGATGTTCCACGGGATAAAAACATTACTGCTGAAGTTATGAAGTCCTTGAATATCCCTAGAGGTGTAAGTCGTGTGCTCTTCAGAACATTGAATACTGANAGGCGGCTTATGTTTAAGAAGGAATTTGACACAAGCTATGTCGGATTCAAGGAGGATGGAGCAAAATGGCTGGTGGAGAACACTGACATCAAACTTGTTGGAGTTGATTACTTATCTGCAGCTGCTTATGATCATTCGATTCCATCTCATCTTGTTTTTCTGGAAAGCCGGGAAATCATTCTTGTTGAAGGCCTTAAGCTCGATGATGTCCCAGCAGGAATATACACACTCAACTGCTTGCATCTTAGGAAACCATGTAGCCCGAAGATAATCGGTGGTGTTCACGAGGAGCAGTTTGAGGCAGCCAAACTGATAGTAATGTGTTGGGATGCGTTGTGGTCGGTGGCGGTGTGCGCCTTGGCGGTGGCGATTTTGGCGGAGGCGGTGATCGGCGACGAGCAGCTCGTCCCTCTTCGGCGGGAAGTGTACGACGATGGGCGAATATTCGATATCAGTCACAGGTATCAACCGGACATGCCGTCATGGGAGTCTGATGATGGCATCGGGCAGTTCCTATGGCTTCCGAAGAGCATGAAGAACGGTTCCCTTGCCAACAACTCCGAGATGAAGCTCCCAACCCACACCGGTACCCACGTCGACGCCCCCGGCCACGTCTTCGACCACTACTTCGACGCTGGCTTCGATGTCGATTCCCTCGACCTTCACATCCTCAATGGCCCTGCTCTGTTAGTCGATGTTCCAAGAGATACCAATATAACTGCTGAAGTTATGAAGTCGTTAAATATTCCAAGGGGTGTAAAGCGTGTACTCTTCCGAACGTTAAATACCGACAGGCGGCTTATGTTTAAGAAGGAATGGGACACAAGCTATGTGGCATTCACAGTGGATGGAGCAAAATGGCTTGTGGAGAACACTGATATCAAACTTGTTGCTCTGAAGCTAGATGATGTCCCAGCAGGATTATATGCAGTCCATTGCTTACCTCTTAGGTTGGCAGGTGCTGAGGGATCACCAATACGATGCATTCTGATTAAGTATTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00263	136615	146943	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0019441 tryptophan catabolic process to kynurenine

molecular_function
GO:0004061 arylformamidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000263s00013580.1	PF04199.8	Cyclase	55	212	1.80E-22
Glyur000263s00013580.1	PF04199.8	Cyclase	319	469	2.20E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	35.945
SRR1783600	control	35.908
SRR1783602	moderate drought stress	50.594
SRR1811619	moderate drought stress	49.699

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	38.459
DRR006520	Root Summer glycyrrhizin high producing strain	38.117
DRR006521	Root Winter glycyrrhizin high producing strain	51.048
DRR006522	Root Winter glycyrrhizin high producing strain	50.703
DRR006523	Root Summer glycyrrhizin low producing strain	34.346
DRR006524	Root Summer glycyrrhizin low producing strain	34.436
DRR006525	Leaf Summer glycyrrhizin high producing strain	69.450
DRR006526	Leaf Summer glycyrrhizin high producing strain	67.949

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	50.578
SRR2868004	Drought Stress (root)	48.661
SRR2967015	Control (root)	52.301

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	91.943
SRR9715740	Leaf	121.868
SRR9715741	Leaf	86.789
SRR9715739	Root	49.584
SRR9715742	Root	44.844
SRR9715743	Root	41.835

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	34.349
SRR8749028	MeJA induced 9h	31.269
SRR8749029	MeJA induced 9h	29.694
SRR8749030	Uninduced	12.625
SRR8749031	Uninduced	7.438
SRR8749032	Uninduced	12.141

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	80.643
SRR8400027	Control - Root	74.036