Gene detail information of Glyur000263s00013576 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G34160.1 | 6.00E-76 | CYCLIN D3;1 |
| NR | XP_007143039.1 | 0 | hypothetical protein PHAVU_007G038400g [Phaseolus vulgaris] |
| Swissprot | tr|P42753|CCD31_ARATH | 4.00E-112 | Cyclin-D3-1 |
| trEMBL | tr|V7BDN5|V7BDN5_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW15033.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00263 | 117596 | 120002 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000263s00013576.1 | PF00134.18 | Cyclin_N | 96 | 221 | 1.50E-29 |
| Glyur000263s00013576.1 | PF02984.14 | Cyclin_C | 224 | 337 | 3.30E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 26.707 |
| SRR1783600 | control | 26.888 |
| SRR1783602 | moderate drought stress | 17.309 |
| SRR1811619 | moderate drought stress | 17.603 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 30.163 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 29.932 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.564 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.367 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.775 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.810 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 71.259 |
| SRR2868004 | Drought Stress (root) | 29.262 |
| SRR2967015 | Control (root) | 50.384 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 16.466 |
| SRR9715740 | Leaf | 0.673 |
| SRR9715741 | Leaf | 3.278 |
| SRR9715739 | Root | 4.657 |
| SRR9715742 | Root | 9.365 |
| SRR9715743 | Root | 8.640 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 103.357 |
| SRR8749028 | MeJA induced 9h | 30.165 |
| SRR8749029 | MeJA induced 9h | 36.379 |
| SRR8749030 | Uninduced | 1.226 |
| SRR8749031 | Uninduced | 0.731 |
| SRR8749032 | Uninduced | 1.407 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 61.962 |
| SRR8400027 | Control - Root | 67.430 |