Gene detail information of Glyur000263s00013573 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G71040.1 | 0 | Cupredoxin superfamily protein |
| NR | XP_004496967.1 | 0 | PREDICTED: spore coat protein A-like isoform X1 [Cicer arietinum] |
| COG | YP_001253422.1 | 3.00E-118 | spore coat protein [Clostridium botulinum A str. ATCC 3502] |
| Swissprot | tr|Q949X9|LPR2_ARATH | 0 | Multicopper oxidase LPR2 (Precursor) |
| trEMBL | tr|I1NFV5|I1NFV5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G26270.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00263 | 97426 | 102938 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000263s00013573.1 | PF07732.10 | Cu-oxidase_3 | 126 | 215 | 1.80E-07 |
| Glyur000263s00013573.1 | PF00394.17 | Cu-oxidase | 268 | 355 | 2.20E-08 |
| Glyur000263s00013573.1 | PF07731.9 | Cu-oxidase_2 | 441 | 571 | 8.20E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 29.023 |
| SRR1783600 | control | 29.182 |
| SRR1783602 | moderate drought stress | 21.741 |
| SRR1811619 | moderate drought stress | 21.718 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 34.687 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 34.287 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 14.070 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.640 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 55.390 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 55.600 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 54.672 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 53.739 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 21.683 |
| SRR2868004 | Drought Stress (root) | 26.509 |
| SRR2967015 | Control (root) | 21.367 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 187.301 |
| SRR9715740 | Leaf | 231.281 |
| SRR9715741 | Leaf | 190.868 |
| SRR9715739 | Root | 30.594 |
| SRR9715742 | Root | 108.913 |
| SRR9715743 | Root | 90.265 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.339 |
| SRR8749028 | MeJA induced 9h | 4.934 |
| SRR8749029 | MeJA induced 9h | 2.427 |
| SRR8749030 | Uninduced | 2.112 |
| SRR8749031 | Uninduced | 0.850 |
| SRR8749032 | Uninduced | 0.720 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 21.071 |
| SRR8400027 | Control - Root | 22.165 |