Gene detail

Gene detail information of Glyur000263s00013571

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G23000.1	9.00E-32	Heavy metal transport/detoxification superfamily protein
NR	XP_003555274.1	0	PREDICTED: putative uncharacterized protein DDB_G0286901-like [Glycine max]
Swissprot	tr\|Q94BT9\|ATOX1_ARATH	2.00E-10	Copper transport protein ATX1
trEMBL	tr\|K7N344\|K7N344_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G26250.2}

Sequence

Transcript Sequence

>Glyur000263s00013571.1
ATGACTAAAGAAGAAGACTTTAAGCTACTTAAAATCCAGACTTGTGTTCTCAAAGTGAACATTCACTGTGATGGGTGTAAGCAGAAAGTGAAGAAACTCCTTCAGAGAATTGAAGGTGTTTACCAAGTTCAAATAGATGCTGAACAGCAGAAAGTAACAGTTTCAGGTAGTGTGGATTCTGCAACTTTGATCAAGAAACTGGTCAGATCTGGTAAATATGCCGAGCTCTGGTCTCAGAAAATTAATCAGAACCAAAAGCAGAAGAANAACAACAATGGTGTCAAAGATGACAAGAACAAGGGACAAAAGCAAGGTCTGGTGAAGGGGCTTGAGGCCTTCAAAAATCAGCAGAAGTTTCCTGCTTTTAGTTCTGAAGAGGATGATGAATACTACGACTACGATGATGACGAAGACGATGAAGATGAAGAGATGCGGTTTATCAGAGAGAAAGCCAATCAACTGCAGTTGCTCAGGCAAGCAGCTGATGCAAACAATGTTAAGAAAGGCATGGGAGCTATTTCTGCAGTTTCCAACAATGGGAAGATGAACAATGGTGGCAATGCCAATGGTGGCAAGAAAGGAGGCCCAAATCAGAACATGGGAATGAAGGACAGCCCTGGTGGTGGTGGTGGTCTTGATCAGAAAACCATGGCAGCTCTGAAATTGAACAATGCCCACCTGGGTGGTGGTGAAAGCCTCAATCTTGGAGAGGCCAAAAGGGCAAGTGACATTGGTGCTATGATGAATCTAGCTGGGTTTAATGGGAACGGTGCTAATGTGGGTAGTGCCACTGTTCTAGGGGGAAATTCCAATGGTCTAGGAGGCTTTCCTGTTCAGTCCAACAACATGATTCCGGGATCCTCTGCAGGCATTCCAAATGGTGGTCTTGCTACGGGCCAATATCCATCATCTCTGCTGATGAACATGAATGGCTTCAATAACATTAACCATCCATCCCCATCCCCACTAATGATGAACATGAACATGCAGGCCAGGCATGCCATGCAGCAACAGCCTCAGATGATGTATCACAGGTCCCCTTACATTCCTCCTAACACTGGTTATTACTACAATTATAACTACAGCCCTGCAAATTACTCCTCCTATGNCTTGCCTAGTTACCCAGTGGATGATCACTCTTCTGCAGCACACATGTTCAGTGATGACAATACTAGCAGCGGCTGTTCAATAATGTAATGATAGGTTGTAGAGTTATTAAAAATTGAAAAAGAAAAAGAAGCAAAAAGAATGGTGTTTGACCTTAAAGTCCCAATCANCAAGCTAGTATAGTGTTTGACTGTAATTTGGTGTGGGGCAGATGAATGAATGTGTTAGGGATGTGGATGTGTTTGTGAATTATCAGTGTACTGTGTAGTGGTTGAGATGATGTTTGCCTTTGTTTTAAAAAAATGTCATTGGTTGTTTGTCTCATGACTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00263	83364	85676	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0030001 metal ion transport

molecular_function
GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000263s00013571.1	PF00403.21	HMA	17	68	2.10E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.339
SRR1783600	control	1.377
SRR1783602	moderate drought stress	0.707
SRR1811619	moderate drought stress	0.606

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.980
DRR006520	Root Summer glycyrrhizin high producing strain	0.971
DRR006521	Root Winter glycyrrhizin high producing strain	0.077
DRR006522	Root Winter glycyrrhizin high producing strain	0.074
DRR006523	Root Summer glycyrrhizin low producing strain	2.733
DRR006524	Root Summer glycyrrhizin low producing strain	2.455
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.815
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.512

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.743
SRR2868004	Drought Stress (root)	13.180
SRR2967015	Control (root)	13.294

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.914
SRR9715740	Leaf	3.812
SRR9715741	Leaf	4.457
SRR9715739	Root	0.483
SRR9715742	Root	2.239
SRR9715743	Root	2.317

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.974
SRR8749028	MeJA induced 9h	0.939
SRR8749029	MeJA induced 9h	1.899
SRR8749030	Uninduced	0.133
SRR8749031	Uninduced	0.106
SRR8749032	Uninduced	0.079

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.544
SRR8400027	Control - Root	11.439