Gene detail information of Glyur000263s00013560 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G71060.1 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | AES62791.2 | 0 | PPR containing plant-like protein [Medicago truncatula] |
| Swissprot | tr|Q9C9A2|PP112_ARATH | 0 | Pentatricopeptide repeat-containing protein At1g71060, mitochondrial (Precursor) |
| trEMBL | tr|G7IAS0|G7IAS0_MEDTR | 0 | PPR containing plant-like protein {ECO:0000313|EMBL:AES62791.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00263 | 36462 | 38057 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000263s00013560.1 | PF13812.1 | PPR_3 | 148 | 177 | 0.12 |
| Glyur000263s00013560.1 | PF13812.1 | PPR_3 | 182 | 214 | 0.0019 |
| Glyur000263s00013560.1 | PF13041.1 | PPR_2 | 219 | 262 | 6.50E-12 |
| Glyur000263s00013560.1 | PF13041.1 | PPR_2 | 284 | 331 | 2.20E-13 |
| Glyur000263s00013560.1 | PF13041.1 | PPR_2 | 356 | 401 | 1.80E-11 |
| Glyur000263s00013560.1 | PF13041.1 | PPR_2 | 424 | 472 | 4.50E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.699 |
| SRR1783600 | control | 2.541 |
| SRR1783602 | moderate drought stress | 2.353 |
| SRR1811619 | moderate drought stress | 2.442 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.414 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.336 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.188 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.235 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.076 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.882 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.517 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.522 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.376 |
| SRR2868004 | Drought Stress (root) | 5.555 |
| SRR2967015 | Control (root) | 5.487 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.578 |
| SRR9715740 | Leaf | 0.437 |
| SRR9715741 | Leaf | 0.521 |
| SRR9715739 | Root | 1.446 |
| SRR9715742 | Root | 2.319 |
| SRR9715743 | Root | 1.904 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.173 |
| SRR8749028 | MeJA induced 9h | 3.252 |
| SRR8749029 | MeJA induced 9h | 1.031 |
| SRR8749030 | Uninduced | 0.513 |
| SRR8749031 | Uninduced | 0.260 |
| SRR8749032 | Uninduced | 0.507 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.898 |
| SRR8400027 | Control - Root | 5.092 |