Gene detail

Gene detail information of Glyur000262s00020220

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G36010.1	2.00E-118	E2F transcription factor 3
NR	XP_004497676.1	0	PREDICTED: transcription factor E2FA-like [Cicer arietinum]
Swissprot	tr\|Q9FNY0\|E2FA_ARATH	6.00E-141	Transcription factor E2FA
trEMBL	tr\|I1JGJ7\|I1JGJ7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G35850.1}

Sequence

Transcript Sequence

>Glyur000262s00020220.1
CGAAGTTCCCTCCACATCTATCCGAAACAAAATTCCCTCCTTTCTTCCCTCGTTTTCTGCTCTCGCCTCCTTCACACCCTAAACTCCCTTTTGTTTTTCCTCCAAAAACCCCTTTTCTTCTCTCTCTCTAAACCCCACTTTCTCTCTCTAAAACTCTACTCCTCTCCGATCCTCTCCCATTTCCCCCAACTTCCACNCCAATTCGGATTTTCCGCCGTGACCGCGGCCAGTTTTCTCGCTCAATGACCGGCGGCGCAGGAGCTTCCGCCCGCCGCGCGTCTCCGCCGCGGGAGGCTGCCGGCGCCCCGAACCGGCCTCCGCTGAAGCGCCATCTGGCCTTTGCATCGACGAAGCCACCATTTGCTCCGCCGGATGACTACCACAGCTTCGCCAACGCCGACTCCTCCAGGAGAGTCGCCGATCACGTCGCTGAAGCCGTCGTTGTCCGATCTCCGTTCATAAAGCCGAAGAATGGAATGAATGACAATGAAGGAGACCCGCAAAAGTGGAGTAACAGCCCTGGATACACCAATGTAGTGAATAGCCCCTTCAACACTCCTGTGTCTGCAAAAGGGGGAAGGGCACATAACAGGTCAAAGGTTTCCAAAGAAGGCAGATCATGTCCTCCAACACCCATCTCAAATGCTGGTTCCCCTTCTCCTCTTACTCCTGCTGGAAGCTGTCGTTATGACAGTTCCTTAGGTCTGTTGACAAAAAAGTTCATCAATTTGGTCAAGCATGCAGAGGATGGTATTCTTGACCTAAATAAAGCAGCAGAAACTTTGGAGGTGCAAAAGCGGAGGATATATGACATAACTAATGTTTTGGAAGGCATTGGTCTCATTGAAAAGAAGCTCAAGAACCGAATACATTGGAAAGGAACTGAATCTTCTACGTCGGGTGAGGTGGATGGTGATATCTCTACGCTTAAGGCAGAAGTTGAAGAACTTTCTTTGCAAGAGCAGAGACTAGATGATCAAATAAGGGAAATGCAAGAAAGGCTGAGGAGTTTGAGTGAAAATGAAAATAACCAAAAGTTCCTTTTTGTGACCGAGGAAGATATTAAGGGCCCACCTTGCTTCCAGAATGAAACTTTGATAGCAATCAAAGCTCCACACGGAACCACCCTGGAAGTCCCTGATCCTGAGGAAGTAAGTTTAGGGCATAAATTGATGAAAGAGAAATTTGAAGAGATTAATGGTGCTGAGCCCCCCATGAACTTCCCTCTTGCTTCAAGTTCAGGGTCTAATGAGCAACAAGTGACAGAAATGGTTCCTGCTGATTGCAGTGGACAAGGACTTGAACCTCAACCTCAACTCTCTTCTCATGCATACTCAGATCTAAATGCTTCACAAGAGTTTGCTGGGGGCATGATGAAGATTGTCCCTTCTGATGCCGATAATGATGCAGACTATTGGCTTCTATCAGATGCTGAAGTTAGTATAACAGATATGTGGAGAACAGACTCTAGTATTGACTGGAATGGAGTGGACATGCTTCATTCTGACTTTGGAGTGATCTCAAGGCCGCAAACACCATCACCCGGGTTTGCTGAAGCGCCATCCGCAGTATCTAACCCTAATCAGAGTTATAGTAGACATAGTAAGCTCAAGGAGGATTTAGCTTGGAAGTCTGGCGTCGCGGGTCTAGATTTTTTTGAAGATGAGAGTTGCTATGTGGATGCTGACTGCAAACAATTGCAAGGTGCACTGGATCTTGTTAGGATATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00262	189232	194694	+

Gene family

Gene family	subfamily
Transcription Factors Family	E2F-DP

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005667 transcription factor complex

molecular_function
GO:0003700 transcription factor activity, sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000262s00020220.1	PF02319.15	E2F_TDP	148	213	2.20E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.237
SRR1783600	control	1.955
SRR1783602	moderate drought stress	1.293
SRR1811619	moderate drought stress	1.391

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.380
DRR006520	Root Summer glycyrrhizin high producing strain	1.068
DRR006521	Root Winter glycyrrhizin high producing strain	2.656
DRR006522	Root Winter glycyrrhizin high producing strain	2.623
DRR006523	Root Summer glycyrrhizin low producing strain	1.122
DRR006524	Root Summer glycyrrhizin low producing strain	1.071
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.654
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.828

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.463
SRR2868004	Drought Stress (root)	2.617
SRR2967015	Control (root)	2.935

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.903
SRR9715740	Leaf	1.233
SRR9715741	Leaf	1.288
SRR9715739	Root	0.551
SRR9715742	Root	0.793
SRR9715743	Root	0.727

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.962
SRR8749028	MeJA induced 9h	12.211
SRR8749029	MeJA induced 9h	8.370
SRR8749030	Uninduced	3.704
SRR8749031	Uninduced	5.571
SRR8749032	Uninduced	3.168

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.385
SRR8400027	Control - Root	3.376