Gene detail

Gene detail information of Glyur000262s00020211

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G65440.2	0	global transcription factor group B1
NR	XP_004499769.1	0	PREDICTED: transcription elongation factor SPT6-like [Cicer arietinum]
COG	YP_003250270.1	5.00E-22	Tex-like protein [Fibrobacter succinogenes subsp. succinogenes S85]
trEMBL	tr\|G7ZZF8\|G7ZZF8_MEDTR	0	Transcription elongation factor SPT6 {ECO:0000313\|EMBL:AES84596.1}

Sequence

Transcript Sequence

>Glyur000262s00020211.1
NGTTTAGTAAGTAGCATGTGCTGGGTAGTATCTGTATTTTATAGGTGGTGTCAGACAGTAGTACTAGAGATGATGCTCGATCAAATTGTGATGATTTATTTTTTTCCTCACTTGGTGAAGCAGAAGAAGGCTTGGATGGCTTTGAGGTTGATGGGTTTATAGTTGATAATGTTGAAGATGAAGAAGATGGTGAAGAAGAAAATCCAAAACAAACGCAAAAGAANAAGAAAAAGAGATCGTCGAAAGACATTGTTCTTGACGATGATGATCTTGAGTTAATCCGTGAGAACAAGAGCATAAATCAAGATAAATTGAGTGATGGAAAATACAAGAGGCTTAAAAAGGCTGGCATAGACACTGAGCTGATGGAACACTCTTCTAATGACGAAGGATCACTTTTTGATGATTCTAGTGAAGATGAGTCGAATAACTCAGAAGATGACATGGCAGATTTTATAGTGAATGAAGAGGTCAATGTCAATAGGAATGGANATTCTCTCGGACAGAGAAAGTTTAAAGGCATACAACATTCATCTTCCCTTTCGAAAAAAGCCAAACATAGTTCTGGCAAGGCAGGTCTGCTGGAAGAGCATATTGGGGAAGTTCAAACTACAAATACATATGTAGCTGGAGCGGGTAACTCTTTGGCTGATACAGACATACCTGAGAGGATGCAGATAATTGAGGACATTGTGGGACCTGCTCCAGTTGATAGAACGAGTATAGAAGAAGAAAGTTCTTGGATATTACGTCAACTTGAGTCCAACATAAATCAATTGTTCAGTGAGGCCAAATCCTGTGGACTAGTTGATGTAATAAAAAGTGAAGATATTGTTAGGTTCTTGGAATTAAATCATATAAAAAAATATGATANTCCATTTATTGCGATGTACCGTAAGGAACAATGCCCTAGTCTTCTGGAAGATCCAAATCAGGATGACTCAGAAAACACATCATTGAATGATATTGAGAGAAAACCTAAGCTGAAATGGCACAAGATACTCTGGACAATCAAGGAATTGGATAAAAAGTGGCTGCTTCTTCAGAAGAGGAAGAACATGCTCATGAGATACTATAACAAACATTTTGAGGAAGAATGCCAAATGTCTTTTCTTGTTGAAGAATCCAGTGNCCGTAAGCAGATTTTTGACTCCATCACCAATATGCTCGAGAAGGCTGAAACAGAGAGAGAGATTGATGATATTGATATGAAGTTTAATTTGTATTTTCCACGAGCCGATGAGTTCTCTCCTAGTGGTTATAGAAGGCCTCTGGTGAAATCATACTATTCCAATTGCAGAAAGGCAGGGCTTTTGTCACTTGCAAGCAAATTTGGCAATCCTGAGAAATTTGGTTCTCAAGTTACTCTTAACAAAGTGGGAATGGTCAACGAAGAAGATCCAGAGGAATCTCCGGAGGAGATGGCTTCAATATACAAGTGTGAAATGTTTCAAACTTCAGAAGCCGTACTTAAAGGCGCCAGGCACATGGCTGCAGTGATGTTAAGTTGTGACATACCTTTCAGGAAATATGTCCGCAGCATATTTATGGACAAGGCTTTAGTATCAACTAGCCCTACATCAAAAGGAAATATAGCAATAGATTCCTGTCATGAATTTGCTGGTGTTAAGTGGCTGCAGGACAAACCTCTCTCGAAGTTTGTGGATTCCCAGTGGTTTGTCATTCAGAAGGCTGAAGAAGAGAAGCTTCTCCAAGTTGAAATAAAATTGCCTGATCATACTGCCAATGAGTTGACAAAGACCTGTAATGATGCTTATCTCAAAGATAGTGAAGGAGCATTTACTAGGCTTTGGAATGAGCAGCGTAAATCTATCCTGCAGGATACTATTTCAAATTTTCTCTTGCCTTCTATGGAGAAGGAAGCTCGGGCACTGTTAAATGCTAAGGCTAAAAACTGGCTATTAATGAAGTATGGGATGCAGTTGTGGAACAGAGTCTCTGTGGCACCGTATCAAAACAATGACAAAGCTACTGCTGCACAAGAAGGGGGAGTCATGGCTTGTTGTTGGGGAAATGGAAAGCCAGGTACCACATTTGTCATGTTGGATTCAAGAGGAGAATTGGTTGATGTGATGCATGCTGAGTCGCTTACACTACGATCTCGGAATATCAATGACCAGCAGCGCAGGAAAAATGATCAGAAGCGTGTCGTCAAGTTCCTAACAATTCATCGACCAAATGTTATTGTACTAGGAGCTGGTAATGCGTCCTGTATAAGGTTGAAGGAGGACATTAATGAGATTATTTCCATGATGTCGGAGGACGATTTTCAAAACATCAGTCAAGAGATGAAAGGACTACCGGCAGTTGTATTAGGGGATGAAGGCTTGCCTCGTCTTTATGAAGATTCAGAAATTTCCATGAGCCAGCTTCCCAGACAACATGGCATTGTCAAGAGAGCTGTGGCTCTTGGACGTTACCTTCTAAATCCACTGGCCATGGTTGCAACACTCTGTGGAGTCAATAAAGAGGTTGTGTCTTGGAAGTTGAACTCAAACCCTCTGGAGAAATTCCTGTCAAGTGATGAGAAGATGGAGATAATTGAATGGATCATGATAGATATTACAAACCAAGTAGGGATAGACATAAATTTGGCAATTAGACATGACTGGCTTTTGGCTCCTTTGCAGTTTGTTTCTGGTCTTGGACCCAAGAAAGCTGGTCTTTTGCATAGAGAACTACTTGGAGGTACAGATGTGAGAAATCGGAGAGACTTTGCTAAATTTGGACTGAACACAAAAAAGGTTTTCTGCAATGCCATTGGCTTTTTACAGGTTTCTTGCGATGACCCAAATTTTGTTGATACTGTTGGCAATACCCTTGATCGTACAAGAATTCATCCAGAGTCATATAAACTTGCTGAGGAATTAGCTACAGCTGTTGTTCACAGACATTTTACTATGGAAAATCCAGATGCTAATGTTACCCAAGTGAAAGCAATTGAATATATTCAAAATGATCCAGAACCGCTAGAGAGTTTTGATCTAAATGAATATGCAGATAGACTGGAAACAGAAAANGGTGAATACAGAAGGGTGACTCTTTTTGACATAAGGATGGAACTACTCCATGGATTTAAAGATCCTAGGAGGCCTTATCAGGAANTGACTCAAGATGAGGAGTTCCATATGATAACTGGAGAAACCGGGGATGCGCTGGTTGAAGGAAAAAAAGTTCAGGCAGTAGTTCGTAATGTACAGTCCCGACAAGCATTTTGTGTGCTTGACACTGGAATGCCTGCAATACTTTTTAAGGAGGACTTTTCAGATGAAATTGGGGATATGTATTTAACAGACAAGCTGCATGAAGGTGTTGTGCTTACATGCAAGATCAAACTAATTGATAAGGACAGATGCCGGGTCAATCTGACATGTAAAGTGAGTGAGTTGAAGAATGCTGATGAACAAAGTGTCCATGACATGGATCCCTATTATTGTCAAAGAAACGTCACTATACCAAGTCAACAAGAGGCAACAGACCGAAAGGAGCTTGTGGATAAACATTTCTTGCCCAGGAGGATTTCTCACCCCCATTTTCAGAATATAACTGCAGATCAAGCAAAAGAGTTCCTTGCAGATAAGGNTGTTGGGGAATATGTTTTCCACCCAAGTCCAAAGGGTCTATGTTATTTGACCTTATCTCTTAAAATTTTTTGTGGACTGTATGTGCACAAAGACATTTTGGAAGGTGGGAAGGGTCATGATATGAAAAGCTTGCTTGGACTTGGAGAGACACTAAAAATAGGACAGGATATATTTGAGAACATAGATAAGGTTATTGAACACTATGTCAATCCGTTGGTAGTTCATCTGAAAGCTTTGATTAATTTCCGAAAATTTAAGAAGGGCTCAAAAGCTGAAGTTGATCAACTATTAAAAATTGAAAAGGAGGAATATCCAAAGAGGATACCATATGGCTTCGGCATTTCATATGAGCATCCTGGCATTTTCATATTGTCTTACATTCGAACCACCAATCCACACCATGAGTTTATTGCTATCCATCCAAAAGGATTCAAGTTCAGGAAGCAGATATTCAACAGTGTTGAGCAGCTGGTGGCATATTTTCAGAATCATATCAATGATAATGTTGCACGATCAAAAGACCACGTAACAGGTGGATCATCTGAAGGTTGGAAAAGCAACAATGTAGATCAACAGAAGCAATCAATAGGTTACAATGACCATGGGGATGGTCGTGGAGCTGGATTTGGCCGTGGTCGTGGCCGTGGCCGTGGGGATCGTGGTCGTGGCCGTGGGGATCGTGGACGTGGTTTTGGTCGTAAGTCTTTCTCTCATGATGATAGTACTGGTGATGTCAAGGACAACATTGGAACTGATCACACTAATGATGTTGGTACTGGTTGGGCCAATTCTAATTCTTGTGGTTGGAAAAATAACACTGGTAAGAGTTGGAGTGGGGGTGGTTCTGGCGAAGGCGGTGGTGATGAAGCCACTAATTTTAGTCATAGAGATTCTTCTAATGAATGTGGATGGGGACAGGGACAGGGACAGGCTCAAGGATGGGGAGGGAGCCAAAGTGATGACAGTGGAAAATGGGGCACTAAAGGAAGCGACCGCTCTGGTAATGGTGGTTGGGCAAGTGGCAATTCTTTTGGGCTCAAGGATGGGGAAAGGGATGGGGAGGGAGCCAAAGTGATGACAGTGGTAAATGGGGCACTAAAGGAAGCGACCCCTCCGGTAATGGTGGTTTGGGCAAGTGGCAATTCTTCTGGTTCGAAAGATAATTTTAGCAATCAGAATAGCCAGGAGAATGAGAAGGCAGGGACAGGCTCAAGGATGGGGAAAGGGATGGGGAGGGAGCAAAGTGATGACAGTGGTAAATGGGGCACTAAAGGAAGCGACCACTCCGGTAATGGTGGTTGGGCAAGTGGCAGTTCTTCTGGTTGGAAAGATAATTTTAGCAATCAGAATAGCCGAGAGAAATGGAGAGGCATGGCAGGCGATAGATATGGAGATGCCTCTAATGATAGGGGACGTGGTCGTGGGGGTGGAAATACAGCTGACTCTAATGATAGTGGTTGGGAACGGGGACAGGGACGAGGAAGGGGAAGAGGACGGAGAGGAAACCAAGGTGATGGCCAAGGACATGGTCGTTGGGGTGGAAATAGTACAAATGAAGAAAGCAGTTTAGCTGGAGGTAGTTGGGGAATCACAGAAGCCAGTAATGGTGGATCTGGAAATGAGAATTCTGGATGGAGTGGT

Protein Sequence

>Glyur000262s00020211.1
MEHSSNDEGSLFDDSSEDESNNSEDDMADFIVNEEVNVNRNGXSLGQRKFKGIQHSSSLSKKAKHSSGKAGLLEEHIGEVQTTNTYVAGAGNSLADTDIPERMQIIEDIVGPAPVDRTSIEEESSWILRQLESNINQLFSEAKSCGLVDVIKSEDIVRFLELNHIKKYDXPFIAMYRKEQCPSLLEDPNQDDSENTSLNDIERKPKLKWHKILWTIKELDKKWLLLQKRKNMLMRYYNKHFEEECQMSFLVEESSXRKQIFDSITNMLEKAETEREIDDIDMKFNLYFPRADEFSPSGYRRPLVKSYYSNCRKAGLLSLASKFGNPEKFGSQVTLNKVGMVNEEDPEESPEEMASIYKCEMFQTSEAVLKGARHMAAVMLSCDIPFRKYVRSIFMDKALVSTSPTSKGNIAIDSCHEFAGVKWLQDKPLSKFVDSQWFVIQKAEEEKLLQVEIKLPDHTANELTKTCNDAYLKDSEGAFTRLWNEQRKSILQDTISNFLLPSMEKEARALLNAKAKNWLLMKYGMQLWNRVSVAPYQNNDKATAAQEGGVMACCWGNGKPGTTFVMLDSRGELVDVMHAESLTLRSRNINDQQRRKNDQKRVVKFLTIHRPNVIVLGAGNASCIRLKEDINEIISMMSEDDFQNISQEMKGLPAVVLGDEGLPRLYEDSEISMSQLPRQHGIVKRAVALGRYLLNPLAMVATLCGVNKEVVSWKLNSNPLEKFLSSDEKMEIIEWIMIDITNQVGIDINLAIRHDWLLAPLQFVSGLGPKKAGLLHRELLGGTDVRNRRDFAKFGLNTKKVFCNAIGFLQVSCDDPNFVDTVGNTLDRTRIHPESYKLAEELATAVVHRHFTMENPDANVTQVKAIEYIQNDPEPLESFDLNEYADRLETEXGEYRRVTLFDIRMELLHGFKDPRRPYQEXTQDEEFHMITGETGDALVEGKKVQAVVRNVQSRQAFCVLDTGMPAILFKEDFSDEIGDMYLTDKLHEGVVLTCKIKLIDKDRCRVNLTCKVSELKNADEQSVHDMDPYYCQRNVTIPSQQEATDRKELVDKHFLPRRISHPHFQNITADQAKEFLADKXVGEYVFHPSPKGLCYLTLSLKIFCGLYVHKDILEGGKGHDMKSLLGLGETLKIGQDIFENIDKVIEHYVNPLVVHLKALINFRKFKKGSKAEVDQLLKIEKEEYPKRIPYGFGISYEHPGIFILSYIRTTNPHHEFIAIHPKGFKFRKQIFNSVEQLVAYFQNHINDNVARSKDHVTGGSSEGWKSNNVDQQKQSIGYNDHGDGRGAGFGRGRGRGRGDRGRGRGDRGRGFGRKSFSHDDSTGDVKDNIGTDHTNDVGTGWANSNSCGWKNNTGKSWSGGGSGEGGGDEATNFSHRDSSNECGWGQGQGQAQGWGGSQSDDSGKWGTKGSDRSGNGGWASGNSFGLKDGERDGEGAKVMTVVNGALKEATPPVMVVWASGNSSGSKDNFSNQNSQENEKAGTGSRMGKGMGREQSDDSGKWGTKGSDHSGNGGWASGSSSGWKDNFSNQNSREKWRGMAGDRYGDASNDRGRGRGGGNTADSNDSGWERGQGRGRGRGRRGNQGDGQGHGRWGGNSTNEESSLAGGSWGITEASNGGSGNENSGWSG

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00262	82077	94104	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006139 nucleobase-containing compound metabolic process

GO:0006357 regulation of transcription from RNA polymerase II promoter

GO:0032784 regulation of DNA-templated transcription, elongation

molecular_function
GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000262s00020211.1	PF14639.1	YqgF	552	704	9.50E-12
Glyur000262s00020211.1	PF14635.1	HHH_7	715	811	4.70E-15
Glyur000262s00020211.1	PF14878.1	DLD	825	935	2.60E-20
Glyur000262s00020211.1	PF14633.1	SH2_2	1043	1244	9.10E-39

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.512
SRR1783600	control	17.356
SRR1783602	moderate drought stress	19.259
SRR1811619	moderate drought stress	19.553

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.213
DRR006520	Root Summer glycyrrhizin high producing strain	10.775
DRR006521	Root Winter glycyrrhizin high producing strain	6.367
DRR006522	Root Winter glycyrrhizin high producing strain	5.991
DRR006523	Root Summer glycyrrhizin low producing strain	12.605
DRR006524	Root Summer glycyrrhizin low producing strain	12.779
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.141
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.903

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	28.562
SRR2868004	Drought Stress (root)	31.615
SRR2967015	Control (root)	32.306

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.432
SRR9715740	Leaf	8.646
SRR9715741	Leaf	9.200
SRR9715739	Root	2.155
SRR9715742	Root	18.019
SRR9715743	Root	15.268

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.661
SRR8749028	MeJA induced 9h	22.863
SRR8749029	MeJA induced 9h	6.527
SRR8749030	Uninduced	4.105
SRR8749031	Uninduced	3.566
SRR8749032	Uninduced	2.176

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	24.676
SRR8400027	Control - Root	26.280