Gene detail

Gene detail information of Glyur000262s00020208

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G30400.2	0	multidrug resistance-associated protein 1
NR	KEH32938.1	0	multidrug resistance protein ABC transporter family protein [Medicago truncatula]
COG	NP_969385.1	6.00E-154	multidrug ABC transporter permease/ATPase [Bdellovibrio bacteriovorus HD100]
Swissprot	tr\|Q9C8H0\|AB12C_ARATH	0	ABC transporter C family member 12
trEMBL	tr\|A0A072UV66\|A0A072UV66_MEDTR	0	Multidrug resistance protein ABC transporter family protein {ECO:0000313\|EMBL:KEH32938.1}

Sequence

Transcript Sequence

>Glyur000262s00020208.1
ATGGGTTTTGAGCCATTGGTTTGGTACTGCAAGCCAGAAGCAAACAGTGTGTGGGCTAAAGTAGTAGATAGTGCTTTTGGGTCCTATACACCTTGTGCAATTGACACTCTTGTTGTCTCCACCTCCAATTTGGTTCTTATGGGCCTGTGCTTATATCGAANATGGCTTATTACTAGCAATGCCAAAGCTCAGAGGTTTTGTTTGAAATCAAATTACTACAATTATATGCTTGGAATGTTGGCTGGTTACTGTGCGGCTCAACCTTTGTTGAGATTGCTAACTGGAAATTCAGCTTTTGACTTGAATGAGGAGACTGGTTTTGCTCCCTTTGAGATAACAGCTTTGATCATTGAAACACTTNCTTGGTTCTCAATGATAATTCTCATCCTCTTGGAAACCAAGGTTTATATCCGGCAATTTAGGTGGTTGGTGCGGTTCGGAGTTATTTATGTTTTGGTGGGAGATATTGTTATGCTTGACCTCCTTCTGTCAGTGAAAGATTACTGCAGCAGATCTGCCCTGTTTCTGTATATTAGCACTGTTATCTGCCAGGTGTTGTTTGGTACCTTACTTCTAGTTTACATTCCTAATTTGATTCCACATTCTGGCCATATAACAATGCAAGATGAGGTACCTGACAATGGTGAATATGAACCACTTTGTGGCGAAGATCAAGTTTGCCCCGAGATGCGTGCCAGCATATTCTCTAGGTTAAGTTTTGGATGGATAAATCCACTCATNCAACAAGGCTACAGAAAACCCATCACTGAAAAGGATGTTTGGAAGCTAGACATATGGGATGAAACTGAGACATTAAATGAAAAGTTCCAGAAGTGTTGGATGTTAGAATTTCAAAGCTCTAACCCTTGGCTTTTAAGAGCATTGAACAATAGCCTAGGGAAAAGGTTTTGGTGGGGAGGCATCTTTAAGATTGGTAATGATCTTTCTCAGTTTGTGGGGCCCATTTTGCTGAACCATCTTTTAGATTCAATGCAAAATGGAGATCCATCTTGGATTGGTTACATCTACGCCTTTTCCATATTTGTTGGAGTGGTGGCTGCTATATTCAGAAAATCTTTGAGGCTAACTCATGAAGGTCGAAAGAAGTTCCCATCTGGGAAGCTTATGAATATGATAACAACTGATGCCAATACATTACAGCATATATGTCAAGCACTTCATGGACTATGGTCAGCACCATTCCGCATAGTCATAGCTATNGTTCTCCTATACCAGCAACTAGGTGTTGCTTCAATTATCGGATCAATAATGCTAGTTCTCATTATCCCACTACAGACATTTGTGATCAGCAAAGTGCGAAAACTAACAAAGGAGGGATTGCAACAGACAGACAAAAGGGTTGGTCTCATGAATGAAATTCTGGCTGCCATGGATACAGTAAAATGTTATGCATGGGAAACAAGCTTTCAGTCTAGAATTCAAAGCATACGACATGACGAGCTATCATGGTTCCGCAAAGCACAGNTGCTATATGCTCTTAACACTTTTATACTGAACAGCATCCCAGTTCTTGTGACTGTGACCTCATTTGGGATGTTTACTTTACTTGGTGGAGAATTGACACCTGCAAGGGCATTTACCTCGCTATCGTTGTTTTCAGTTTTGCGCTTTCCCTTAAATATGCTTCCAAGTTTACTAAGTCAGGTAGCAAATGCAAATGTCTCATTGCAACGTTTGGAGGAACTGTTCTTGACTGAGGAGAGAGAATTAAAACAAAATCCACCAATTGTACCAGGACTTCCAGCCATCTCAATTAAGAATGGATGCTTTTCATGGGATCCTAAGGCAGAGAAGCCCACATTATCAGATATCAATGTGGAAATACCAGTTGGCAGCTTAGTTGCAATCATTGGTGGTACTGGAGAAGGGAAAACTTCACTTATTTCAGCAATGATTGGAGAACTACCTCCCGTAGCAGATGGAAATGCTACAATCAGAGGCACTGTTGCTTATGTTCCTCAGATTTCATGGATTTACAATGCTACAGTCCGTGAAAATATATTATTTGGATCAAAATTCGACTATGAACGATATTGGANGGCCATCGATGTCACTGCTTTACAGCACGATCTCAACTCACTACCTGGACGTGATTTTACAGAGATTGGAGAAAGAGGAGTCAATATNAGTGGTGGACAAAAGCAGAGAGTTTCCTTAGCTAGGGCTGTATACTCAAATTCGGATGTTTTCAGGAAGTGTATAAAGGAAGGGCTGCAAGGAAAAACCAAGGTTCTTGTCACCAACCAGCTTCATTTTCTCCCTCAAGTGGATAAAATTATTCTGGTTAGTGAAGGCATGATAAAGGAGCAGGGAACATTTGAGGAGTTGTCAAAACGTGGGCATCTATTTCAGAAACTAATGGAAAATGCAGGGAAAATGGAACAAGAAGCAGATAGTAACAAAGATAGAGATTGTAAAGACAAGGCTAACACTTTACNCTTGAATAATGAGGAAATTGTAGAGTTACCGAATGATGCAAGCTATGAGAAGAAGGGTAAATTAAGAAAATCAGTACTAGTTAAGAAGGAAGATCGGGAGACAGGTGTGGTTAGCTGGAAAGTTATAATGAGTAGCACATGGTTAAGTGTGTGGACAGCTCAAGATTCCACCACTGCTTCTGAAGCAGGATATTTTCTTTTCATCTATGCACTTTTCTCATTTGGACAGGTATCTGTGACACTTGCAAACTCTTATTGGCTGATCATTTCAAGTCTTCGTGCTGCCAAAAGATTGCACGACGCGATGCTAGATAGAATTCTACGGGCTCCAATGGTATTCTTCCAAACTAATCCTGTTGGCCGCATAATCAATAGGTTCGCAAAAGACACCGGAGATATAGATACCAATGTTTTTAGTTTGGTGAATATGTTTCTGGGGCAAGTCTGGCAACTACTTTCGACATTTGTTCTTATAGGCACTGTGAGCACCATATCCCTGTGGGCCATAATGCCACTTCTGATCTTCTTTTATGCAGCTTATATATATTACCAGAGCACGGCTCGAGAGGTGAAGCGCTTGGATTCCATTACAAGATCTCCCGTTTATGCGCATTTTGGAGAAGCATTGAACGGTTTGTCAAGCATTCGTGCTTACAAAGCATATGACAGGATGGAACACATTAATGGAAAATTCATGGATAACAACATCAGGTTNGGTCTTGTGAATATCAGTTCAAATCGTTGGCTGACTATCAGGTTAGAAACATTAGGAGGCCTCATGATTTGGTTGATAGCAACATTCGCTGTCTTGCAAAACAGTAGGGCTGAAAACCAGGCATTGATTGCATCTACAATGGGTCTACTTCTCAGTTACACATTGAACATAACAAATCTCTTGAGTGGTGTCCTAAGACAAGCAAGTAGAGCTGAAAACAGTTTAAACTCTGTNGAGCGCGTTGACACGTATATAAATTTAGAAACCGAGGCTCCAGGTGTAATTGAGACGAACCGTCCACCGCCAGGATGGCCAACATCTGGATCGATCGAGTTTGAGAATGTTGTTCTGACTTACAGGCCTGAACTTCCTCCGGTTTTGCATGGATTGTCCTTTACGGTACCTCCAACTGAGAAGATAGGGGTAGTTGGAAGAACTGGTGCAGGAAAATCTAGCATGCTTAATGCATTATTCCGGATTGTGGAACTACAAAGAGGGAGAATCATTATTGANGGTTGTGATATTTCTACATTCGGACTAGCAGATTTGCGAAGTGTTCTTACTATCATACCACAATCACCAGTTCTTTTCTCCGGAACCGTTCGATTCAATCTTGATCCATTTAATGAACACAATGATGCTGACCTATGGGAAGCTTTGGAAAGGGCACACTTGAAGGATGTAATAAGAAGAAATCCATTTGGTCTAGATGCTCAGGTTTCAGAGGGAGGAGAAAATTTCAGTGTTGGACAGAGACAGCTATTAAGTCTAGCTAGAGCATTGCTGCGAAGATCAAANGTTCTTGTCCTTGATGAAGCTACTGCTGCTGTAGATGTTCTTGAATACANTTCACCTGAGGAACTCCTACAAAATGAAGGAACTGCATTCTACAAGATGGTTCAAAGTACTGGACCAGCAAATGCACAGTACTTATGTGGCCTTGTATTTGGAAGGGCATTGAACAATTCAAATGAACATAACAAAGAGCTTGAAAGTCATCACATGAGACAGTTAGCTTCTACTAATTGGGCTGCTGCTACCCAGTTTGCAATAGCTTCTACCCTTTCTTCTTTACACCATCACCTTCAAAGTNCAAATACTAAAGACAACAATAAAGACATCCTTCATAAAACAAAGGATGCAGTAACAACACTCCAAGAAGTTCTAGAGGGAAAGCATGATGAAGCCATAGAAGAGACACTNACTAACTACCATGTTCCTACAGATAGATGGTGGTCTACTCTCTATAAAGTCATTGAAGGTCTTGTTGTCTTGATCAGGGTGCCTCCGGACAACATTCAACAGTTAGAACCTGATTTTGAAGGGAGATCTTTCGACTAACAAAAATCTTGAAAATGACAAATACAGAGGAGTTATATGCAATCAAATCTCAGAGGGATAGTTGCAATCACAATAATCTTTAGATTTTTTTTTCCCTCAGCTATACTATTTTTTTTAATTTGTATTTT

Protein Sequence

>Glyur000262s00020208.1
MGFEPLVWYCKPEANSVWAKVVDSAFGSYTPCAIDTLVVSTSNLVLMGLCLYRXWLITSNAKAQRFCLKSNYYNYMLGMLAGYCAAQPLLRLLTGNSAFDLNEETGFAPFEITALIIETLXWFSMIILILLETKVYIRQFRWLVRFGVIYVLVGDIVMLDLLLSVKDYCSRSALFLYISTVICQVLFGTLLLVYIPNLIPHSGHITMQDEVPDNGEYEPLCGEDQVCPEMRASIFSRLSFGWINPLXQQGYRKPITEKDVWKLDIWDETETLNEKFQKCWMLEFQSSNPWLLRALNNSLGKRFWWGGIFKIGNDLSQFVGPILLNHLLDSMQNGDPSWIGYIYAFSIFVGVVAAIFRKSLRLTHEGRKKFPSGKLMNMITTDANTLQHICQALHGLWSAPFRIVIAXVLLYQQLGVASIIGSIMLVLIIPLQTFVISKVRKLTKEGLQQTDKRVGLMNEILAAMDTVKCYAWETSFQSRIQSIRHDELSWFRKAQXLYALNTFILNSIPVLVTVTSFGMFTLLGGELTPARAFTSLSLFSVLRFPLNMLPSLLSQVANANVSLQRLEELFLTEERELKQNPPIVPGLPAISIKNGCFSWDPKAEKPTLSDINVEIPVGSLVAIIGGTGEGKTSLISAMIGELPPVADGNATIRGTVAYVPQISWIYNATVRENILFGSKFDYERYWXAIDVTALQHDLNSLPGRDFTEIGERGVNXSGGQKQRVSLARAVYSNSDVFRKCIKEGLQGKTKVLVTNQLHFLPQVDKIILVSEGMIKEQGTFEELSKRGHLFQKLMENAGKMEQEADSNKDRDCKDKANTLXLNNEEIVELPNDASYEKKGKLRKSVLVKKEDRETGVVSWKVIMSSTWLSVWTAQDSTTASEAGYFLFIYALFSFGQVSVTLANSYWLIISSLRAAKRLHDAMLDRILRAPMVFFQTNPVGRIINRFAKDTGDIDTNVFSLVNMFLGQVWQLLSTFVLIGTVSTISLWAIMPLLIFFYAAYIYYQSTAREVKRLDSITRSPVYAHFGEALNGLSSIRAYKAYDRMEHINGKFMDNNIRXGLVNISSNRWLTIRLETLGGLMIWLIATFAVLQNSRAENQALIASTMGLLLSYTLNITNLLSGVLRQASRAENSLNSVERVDTYINLETEAPGVIETNRPPPGWPTSGSIEFENVVLTYRPELPPVLHGLSFTVPPTEKIGVVGRTGAGKSSMLNALFRIVELQRGRIIIXGCDISTFGLADLRSVLTIIPQSPVLFSGTVRFNLDPFNEHNDADLWEALERAHLKDVIRRNPFGLDAQVSEGGENFSVGQRQLLSLARALLRRSXVLVLDEATAAVDVLEYXSPEELLQNEGTAFYKMVQSTGPANAQYLCGLVFGRALNNSNEHNKELESHHMRQLASTNWAAATQFAIASTLSSLHHHLQSXNTKDNNKDILHKTKDAVTTLQEVLEGKHDEAIEETLTNYHVPTDRWWSTLYKVIEGLVVLIRVPPDNIQQLEPDFEGRSFD

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00262	63127	77110	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006810 transport

GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0005524 ATP binding

GO:0016887 ATPase activity

GO:0042626 ATPase activity, coupled to transmembrane movement of substances

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000262s00020208.1	PF00664.18	ABC_membrane	353	546	6.40E-26
Glyur000262s00020208.1	PF00005.22	ABC_tran	608	736	3.40E-13
Glyur000262s00020208.1	PF00664.18	ABC_membrane	862	1111	3.40E-28
Glyur000262s00020208.1	PF00005.22	ABC_tran	1185	1333	2.00E-25
Glyur000262s00020208.2	PF00664.18	ABC_membrane	353	546	6.20E-26
Glyur000262s00020208.2	PF00005.22	ABC_tran	608	661	4.90E-06
Glyur000262s00020208.2	PF00664.18	ABC_membrane	829	1078	3.30E-28
Glyur000262s00020208.2	PF00005.22	ABC_tran	1152	1300	1.90E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.703
SRR1783600	control	1.704
SRR1783602	moderate drought stress	5.211
SRR1811619	moderate drought stress	5.350

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.557
DRR006520	Root Summer glycyrrhizin high producing strain	0.619
DRR006521	Root Winter glycyrrhizin high producing strain	0.411
DRR006522	Root Winter glycyrrhizin high producing strain	0.469
DRR006523	Root Summer glycyrrhizin low producing strain	2.296
DRR006524	Root Summer glycyrrhizin low producing strain	2.213
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.641
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.333

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	28.775
SRR2868004	Drought Stress (root)	87.764
SRR2967015	Control (root)	46.043

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	35.581
SRR9715740	Leaf	45.683
SRR9715741	Leaf	38.738
SRR9715739	Root	0.318
SRR9715742	Root	3.775
SRR9715743	Root	3.335

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.129
SRR8749028	MeJA induced 9h	28.746
SRR8749029	MeJA induced 9h	13.700
SRR8749030	Uninduced	25.976
SRR8749031	Uninduced	19.873
SRR8749032	Uninduced	10.217

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.981
SRR8400027	Control - Root	14.848