Gene detail

Gene detail information of Glyur000262s00020203.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G11440.1	7.00E-94	myb domain protein 65
NR	KEH32923.1	0	myb transcription factor [Medicago truncatula]
Swissprot	tr\|Q0JIC2\|GAM1_ORYSJ	1.00E-95	Transcription factor GAMYB
trEMBL	tr\|A0A072UV52\|A0A072UV52_MEDTR	0	Myb transcription factor {ECO:0000313\|EMBL:KEH32923.1}

Sequence

Transcript Sequence

>Glyur000262s00020203.1
CCTTTCACTTTCTCTCTTTTTTCTTTCTTTCACTTTCACACGCTCTCTCTATAATACACACACACGTTATAAGTGTTGTTGTTAGTGTGAGTTGGGGAAGCTTGATTTGATCACAATGTTCTGCTCTTTCTTCGCTCGGATCCTCCTTCAACTCCTTCACAAACTACGGAACACAGTTTTCATTTTTTCCTTCAGTTCGTAGCTCAAGTTCAACTTCTCTGCTAGCAAAAAAAAAAAACCGATTATTATTTATTGGGAATTTGAGTTAACATATTTGGATCTTAAATTGTATACCATCACTTCCTATTCAGACACTAGTGTTTAAGAGATGAGTCAAATGACAAATGAGATTGAAGATGACGTGCTCTGCAATGATCAGACTGCGTCACAGTTGAATGATGAGGGTAACGGAGGAAGTGTTGGTGGAGTTGTTCTGAAGAAAGGGCCATGGACATCTGCGGAAGATGCTATTTTGGTTGAATATGTCAAGAAGCATGGAGAGGGGAACTGGAATGCTGTTCAGAAGCACTCAGGCCTGTCTCGCTGCGGAAAAAGTTGCCGGCTGCGATGGGCAAATCACCTAAGGCCAAATTTAAAGAAAGGGGCATTTANTTCAGAAGAGGAGCAGTTGATTGCTGAACTCCATGCCAAAATGGGAAACAAGTGGGCACGAATGGCAGCACACTTGCCTGGTCGTACTGATAATGAAATAAAGAACTANTGGAACACCCGGATCAAGAGGTGTCAACGGGCGGGCTTGCCACTTTATCCTTCTGAAGTGTGTTTGCAAGCACTGCAAGACAGTCAATGCGGCAAAGGTACTGGTGGAATTAATGATGGTGATAGAGGGCATCATGATTTCTTGCCGAAGAACAACCACGACCACGATATACATGATGCAATNTTTGACAGTTTGAAGGAAAATCGGGGAATCTTACCTATTGCGCCTGAGCTTCCTGATGTTTCTGCTAATACCATTCTGCTTAACAGTCTTGGTTCTCCTCTGTATTGTAATTCTGTGCCATCAATGTTACCCAACCGAAATCTTCTTCAAGAGTCTACAATGCCTTTTGTTGGTTCCAATGGAACAAACAGGAATTGGTTTTATCAATTTGACCATATTCAGGATCATAGTTCTGATAAAATTTCACAGTCATATGGATTGCATTCTCCCTTTGATCCTGGTCTCTCGTCACATAACTCAATTTGTTACAGCCATTCACTATCAAATGGCAACTCCACTACTTCTAAGCCTACTTTTGAGGCTGTGAAGTTGGAGCTCCCTTCACTCCAATATCCAGAAACCTGTTTTGGTGGCTGGGGTACCTCTCCCCCGCCTCCATTGAATGAGTCTGTTGATGTTTTCATTCAGTCTCTGCCACCTGATGCGCTAGAGTCAAATTGTTCTTCACCGCNTAATAGTGGCTTGCTTGATGCCTTACTTTACCAGGCGAAGACTCTTGCTTGTTCAAAGAACAACTGTTCTGACAAGAGTTCAAATTCATCTACTGCAACTCCTGTTGACAGAGCTGAGAATTCTGCTTTGAACATGTACGAGACAGAATGGGAGGATTATGCTGACCCTGTATCTCCCTTTGGTGCAACTTCAATCCTGAATGAGTGTCAGGCTGTTAGCACCAGAAACTCATGGGATAAATTGACACATGTTCGGAACATTAGTGGCAACAATGTGAAACATGAACCTGTTGAACAAGTTGATACCCCTAACAGTGAAAATCAAGCCATGTCTCTGTTGAACATCACTTGGCCAGATGTCTTGTTAGCCTCAGATTGGCATGAGCAGTGTTTTGGGCATGACAAGAACCGAGCCGTCATGACTGAGGCTAGTGATGATTTAACGGACTACTATCACGTGGCTGGTGGGACTTATTCTTGAAGTATGGTTGCTTCTTGCACATGGAATAACATGCCCCCCTCTTCCTGACTGCCAAATATCTTATCTTCATTAATGCATATTCAGAACTTCTTATTATACACATTCATGTTGACTTTTTAACATGAGNAATCAGTAATGTAATTTCTCCTGTTGAGAGAGTCTTATTTGGGTGTGACTTATCTAAGGCANGGGTCAGAGACTTGTGCCTTTCTACTTAGCTTTATTTCTCTCTTTAGGTGCTGCATTTATTGGTATACCATCTTAAAGCTCNTAGAACAATGCACTTTTGGAGGTATTTGAATAACTTGTAACATTGCACTTGGAACCTTGGACAGCAAGCAGCTAAATAGGGTGACAATTTCTTGTATTTCTTTGCNTATGTTTGTAGATTCTACTGATATTTTGTCATTGATTTGATTATCTGACCAATATAAGATAATGGTGATCTTGATGTGGTCTTTTTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00262	6757	11519	+

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000262s00020203.1	PF00249.26	Myb_DNA-binding	38	85	1.20E-15
Glyur000262s00020203.1	PF00249.26	Myb_DNA-binding	91	134	3.30E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.109
SRR1783600	control	3.149
SRR1783602	moderate drought stress	3.328
SRR1811619	moderate drought stress	3.455

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	20.139
DRR006520	Root Summer glycyrrhizin high producing strain	20.380
DRR006521	Root Winter glycyrrhizin high producing strain	5.919
DRR006522	Root Winter glycyrrhizin high producing strain	5.728
DRR006523	Root Summer glycyrrhizin low producing strain	12.015
DRR006524	Root Summer glycyrrhizin low producing strain	11.925
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.264
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.109

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.934
SRR2868004	Drought Stress (root)	4.386
SRR2967015	Control (root)	4.314

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.365
SRR9715740	Leaf	7.402
SRR9715741	Leaf	2.988
SRR9715739	Root	7.873
SRR9715742	Root	3.491
SRR9715743	Root	3.770

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.746
SRR8749028	MeJA induced 9h	5.811
SRR8749029	MeJA induced 9h	3.354
SRR8749030	Uninduced	7.116
SRR8749031	Uninduced	6.380
SRR8749032	Uninduced	4.273

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.645
SRR8400027	Control - Root	16.137