Gene detail

Gene detail information of Glyur000261s00014379

Functional Annotation

Database	Orthologs	E value	Annotation
NR	AFK44138.1	5.59E-159	unknown [Medicago truncatula]
COG	YP_007121101.1	8.00E-84	DhnA-type fructose-1,6-bisphosphate aldolase-like enzyme [Microcoleus sp. PCC 7113]
Swissprot	tr\|Q1XDB4\|YCF23_PYRYE	2.00E-47	Uncharacterized protein ycf23
trEMBL	tr\|I3SV46\|I3SV46_MEDTR	2.00E-159	Uncharacterized protein {ECO:0000313\|EMBL:AFK44138.1}

Sequence

Transcript Sequence

>Glyur000261s00014379.1
ATGGTTGGTGGCAAGAAGAGATGGTTCTTCAAGAGGCTGAGGAAAGAGTCATTGAGATGGAAGTTTCTGTGGCCTGCATTCAAGTTGAAGAGGCTTACTTTGCCGGTTTCTTTCGTTAACGACGTCGTTTTCAAGGTCGTGTCCGCGTTTGAGGCCATTGTGCTGTGTAAAGCCGCCACATCTTATCTGTTCTGTTCTGTTCTGTTCTGTTCTGTTCCCTCTCTCTTGCATAGACAGACAGACAGACAGACAGACACAGTGCTTCTCAATCCAACCTTCATAGCTCGCTCGCTAGTTGCCACTGATAACTGCAATAGAAAGACAGACATGCATTCCTTAACAACAACAACAACATGCGTTCCACTTTCCTCTCCTTCTCTCCAGTACAACCCTCTACTGGGTGCAGGTGCAACTTCGAGGCCATGTTGTCTTCNTTTAAAAAGAAGAGCCTGCAGCTTNACTACCAGAGCTCTACTCTCATCCACCAAAGAATCTGTCTTGAAGGATTTTCAGGATCGAAGAGCTCTCAAGGGGGGAGCAACTCATGTGGATATAGCATGTGACCCGGAGTTGGTGAGGCTGGCTATCAGCTTAACTTCTTGTCCGGTTTGTGTTTCTTCTGTAGATCCTGCAACATTTCCAGCTGCAGTTGAAGCAGGAGCACTAATGGTTGAGATTGGAAATTATGATTCATTCTATGAGAAGGGAGTGATCTTTACTCCAAAGCAGATTCTAAGTCTAACAAAAGAGACAAGGATAATACTTCCTTCTGTAGTCTTGTCTGTCACTGTTCCTCACACACTAAGCCTCCCTGATCAGGTCAAGCTTGCAGAGTCACTGGAACAAGAAGGTGTAGATATTATTCAAACTGAAGGAGGAAAATGTTCCAATCCTACAAAGTCTGGTGTTCTGGGTTTGATTGAGAAGGCAACACCAACTTTAGCAGCAGCATATTCTATATCACGAGCTGTTAAGATACCTGTCATGTGCTCATCGGGGCTAAGTGCTGTCACAGCACCTATGGCTATCACAGCTGGAGCTTCTGGTGTGGGTGTGGGGTCTGCAGTTAATAGACTAAATGANGTGGTTGCCATGATTGCTGAGGTAAGAAGCATTGCTGATTCATTGAAGACACCCTTTCAGACACGCACTACACATGAAGTGGAAACTCACAGACAGTAAGTAGTTCAAGGAGCAGCTGAAGGTGGTACTGGTGTAGGTAGTGAATAAAACGTGTCAAGAAAATCTGGATCCTTCNTTAAGAATAAGAACTGCTAGGAAGGGTCCATCTTTCTTCGTCCCTTTCTATTTTAGACNTTTCTAATTCTAGTTTTTGTGTTTCTGTGTGGATGTTGATCCCACTCATCCCACAATGTCAAAGAATTGAAACAATGAGTTATTTGGAAATTGGAATTTTGCATCCTTAATTGGTGTTGTTAGCCAGTTGAATGAAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00261	215002	220445	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000261s00014379.1	PF04481.7	DUF561	175	377	1.40E-72

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.508
SRR1783600	control	3.485
SRR1783602	moderate drought stress	10.891
SRR1811619	moderate drought stress	10.866

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	22.096
DRR006520	Root Summer glycyrrhizin high producing strain	22.648
DRR006521	Root Winter glycyrrhizin high producing strain	40.250
DRR006522	Root Winter glycyrrhizin high producing strain	37.617
DRR006523	Root Summer glycyrrhizin low producing strain	17.949
DRR006524	Root Summer glycyrrhizin low producing strain	18.235
DRR006525	Leaf Summer glycyrrhizin high producing strain	30.269
DRR006526	Leaf Summer glycyrrhizin high producing strain	30.706

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.114
SRR2868004	Drought Stress (root)	9.775
SRR2967015	Control (root)	15.272

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	73.898
SRR9715740	Leaf	68.551
SRR9715741	Leaf	70.214
SRR9715739	Root	23.560
SRR9715742	Root	26.124
SRR9715743	Root	26.066

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	23.181
SRR8749028	MeJA induced 9h	10.537
SRR8749029	MeJA induced 9h	24.048
SRR8749030	Uninduced	11.200
SRR8749031	Uninduced	5.440
SRR8749032	Uninduced	9.061

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.896
SRR8400027	Control - Root	12.810