Gene detail

Gene detail information of Glyur000261s00014360.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G30040.1	6.00E-108	gibberellin 2-oxidase
NR	XP_003608505.1	0	Gibberellin 2-oxidase [Medicago truncatula]
COG	YP_004572412.1	1.00E-22	oxidoreductase [Microlunatus phosphovorus NM-1]
Swissprot	tr\|Q9XG83\|G2OX_PHACN	1.00E-158	Gibberellin 2-beta-dioxygenase
trEMBL	tr\|G7JE01\|G7JE01_MEDTR	0	Plant gibberellin 2-oxidase {ECO:0000313\|EMBL:AES90702.1}

Sequence

Transcript Sequence

>Glyur000261s00014360.1
AAACACACTCAGAGCCAGATGGCTCCCTCTATATTAGACTATATAGTTCGTAACGCCTATCCTTCTCTCACCCTTCATGCATTAGCATTCTCAATCTCACCCATTTCCCCATTTATACCCCCATTTGATCACAACACCTTCTCATCAATCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCNCACACACACACACACACACAAACACTTGTTCTCTTTGTGGTTTCAAGTAAAGATCACAATGACGGTTGTTCTTTCGCAGCAAGCTGATGCATTAAAGGAGCTATTTCCCATCAAGGCATGCAATAAGCCAACAACAACAAGTAATTTGTTCACAGGGGTTCCAGAGGTTGACCTTTCAGACCCTGAAGCCAAGACACTTATAGTGAAGGCTTGCCTAGAGCTTGGTTTCTTCAAGGTTGTCAACAACAACCACCGTGTTCCATTGGGGTTGATGACCAATTTGGAAGATGAAGCCCTCAAGTTTTTCAGGCAGNCACAGTGTGAGAAAGAGAAGGCAGGTCCTCCTGACCCTTTTGGCTATGGAAGCAAGAGAATTGGCACAAACGGTGATGTGGGTTGGGTTGAGTACCTCCTCCTCAACACCAACCCNGATGTCTTCTCCCCCAACTCACTTCTCCTTTTAGACCACCAAAACCCAAAAAAATTCAGCTCTGCTGTGGGAGATTATATATGGGCAGTGAAGAACGTGTGCTGTGAAGTGTTGGAATTAATGGCAGATGGGTTGGGGATAGGGCCAAGGAATGTGTTTAGCAGGATGGTGAGGGATGAGAGGAGCGATTCTTGCTTCAGGGTGAATCACTACCCGGCATTGAGTGGTGGTGGAGGGAATTTGATTGGGTTTGGGGAACACACAGACCCACAGATAATATCTGTCCTGAGATCCAACAACACATCAGGGCTGCAAATCTGTCTCAGAGATGGCACTTGGGTTTCAATCCCACCTGATCACACTTCCTTTTTCATCACTGTTGGCGACTCCTTGCAGGTGATGACCAATGGGAGGTTCAAGAGTGTAAAGCACAGGGTATTGACTGACACAAACATGTCAAGAGTGTCGATGATTTACTTTGGAGGACCGCCCTTGAATGAAAAGGTAGCACCTTTGCCATCACTACTCGTGTCAAAGGAAGAAGAAAGTTTGTACAGAGAATTCACGTGGCGGGAATACAAGAGTGCTGCTTACAAGTCAAGGCTGGCTTATAATAGGCTCAGTCTCTTTGAGAAATCTGCTGGTCAATGAGGCCAATATTGGAGGGTCACATAACTCCCCCATTTTAAGCATATATATATATATCCTCTAGATCAGGATAGGTTTCAAAGAGCTGACTCTGTTTGACATACTATATATAGAAGAAAAATGACTAGGCTAGCTGTTTATTAGTACTTTTTATTATCATCTTTCTTTCTCCCTTTGCCCCCTCCTGCTACAAATAGAACTGTCACTACCCTATATTATTATCAATGCAACTGTAGACCTCTAGCAACGTGTTCTTCTGTTATATATTTAAATAAGTTCTCTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00261	117443	119850	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K04125	E1.14.11.13	EC:1.14.11.13	Diterpenoid biosynthesis	map00904

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000261s00014360.1	PF14226.1	DIOX_N	108	201	5.70E-11
Glyur000261s00014360.1	PF03171.15	2OG-FeII_Oxy	261	359	6.90E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.142
SRR1783600	control	0.119
SRR1783602	moderate drought stress	0.099
SRR1811619	moderate drought stress	0.095

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.349
DRR006520	Root Summer glycyrrhizin high producing strain	0.348
DRR006521	Root Winter glycyrrhizin high producing strain	15.545
DRR006522	Root Winter glycyrrhizin high producing strain	15.227
DRR006523	Root Summer glycyrrhizin low producing strain	0.498
DRR006524	Root Summer glycyrrhizin low producing strain	0.429
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.491
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.309

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.504
SRR2868004	Drought Stress (root)	2.246
SRR2967015	Control (root)	3.273

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.472
SRR9715741	Leaf	0.126
SRR9715739	Root	0.444
SRR9715742	Root	0.800
SRR9715743	Root	0.883

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	54.490
SRR8749028	MeJA induced 9h	14.570
SRR8749029	MeJA induced 9h	29.724
SRR8749030	Uninduced	1.559
SRR8749031	Uninduced	0.293
SRR8749032	Uninduced	0.883

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.544
SRR8400027	Control - Root	2.127