Gene detail

Gene detail information of Glyur000261s00014359

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G34560.2	1.00E-127	P-loop containing nucleoside triphosphate hydrolases superfamily protein
NR	XP_004504678.1	0	PREDICTED: katanin p60 ATPase-containing subunit A-like 2-like [Cicer arietinum]
COG	YP_007712705.1	3.00E-35	Cell division protein FtsH [Candidatus Methanomethylophilus alvus Mx1201]
Swissprot	tr\|Q9SEX2\|KTNA1_ARATH	5.00E-53	Katanin p60 ATPase-containing subunit A1 {ECO:0000255\|HAMAP-Rule:MF_03023}
trEMBL	tr\|I3SHP0\|I3SHP0_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK39782.1}

Sequence

Transcript Sequence

>Glyur000261s00014359.1
CGTGATTCAGTCTCTCCCTCAACTCTTCGTGCATTTGTATATTGCTGTACACTACATCCATTTCCTCGCTGGCCTCACTCTTCAGAGACGCGAAGGGTGCTGCTAGTGCTTGCTTGCTGCTGCTCCACTCTAGAGAGAGAAACACTTTTTCAACTCTCTCTCTCTCTCTAACATGGCTGAAGAACCAATGCCTACTCGCTGGTCTTTCCAGGACTTCAAATTGTATTACGATGCTAAGTTTGGTAGGAAGAGAGCGGTGGAAAATGGCGAGACTGTTGATAGAGCGGTCAGTAATGGTGGTTCGTTGGGCNTTGTATCCAATGGCAATCCTCATGCCAAAAGAACATCGGATAGGGCTATCTACGAGCAGTTCCAAAGCCAGGGGCAGAATCCGACNCACACAAATGGTTTTCCGCCAAACAATATGGATGAAAAGCCGCAGAAGTCTCTACTTCCACCTTTTGAATCTGCAGAAATGCGTACTTTGGCAGAGAGCTTATGTAGGGATATCATTCGTGGGAGTCCAGATGTAANGTGGGAAAGCATCAAGGGGTTGGAGAATGCCAAACGTTTACTGAAAGAAGCTGTTGTGATGCCAATTAAGTATCCCAACACCACCACTGTACTTTACTGGTCTGTTATCACCATGGAAGGGCATTCTCCTTTTTGGCCCCCCAGGGACAGGAAAGGTGATTCAGAAAAGTTAGTGAAGGTGTTATTTGAGCTTGCAAGGCATCATGCACCCTCAACAATATTTCTTGATGAAATTGATGCAATCATTAGTCAGCGTGGTGAAGCACGCAGTGAACATGAAGCAAGTAGACGGTTGAAAACTGAACTACTCATTCAGATGGATGGTTTAACTCGGACAGATGAACTTGTTTTTGTTTTGGCGGCAACAAATCTTCCCTGGGAATTGGATGCAGCCATGCTCCGACGTCTTGAGAAGCGAATCCTTGTACCACTTCCAGAACCAGAAGCAAGAAGAGCCATGTTTGAGGAACTCCTTCCTTCACAACCTGATGAGGAACCAATCCCCTATGATTTACTTGTGGACCGGACAGAAGGATATTCAGGCTCAGATCTCCGACTGCTTTGTAAAGAGACAGCAATGCAGCCATTGAGACGCTTAATGTCACAACTTGAACAGACACAAGACGTGGTGCCTGAAGAAGAGTTGCCAAAAGTTGGGCCAGTCAGGCCTGAAGATATAGAGACAGCTTTAAGGAACACAAGGCCATCTGCTCATCTCCATGCCCACAAATATGACAAGTTTAATGCTGATTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00261	100501	109035	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000261s00014359.1	PF00004.24	AAA	172	264	9.10E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.407
SRR1783600	control	18.535
SRR1783602	moderate drought stress	17.073
SRR1811619	moderate drought stress	16.069

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.408
DRR006520	Root Summer glycyrrhizin high producing strain	20.502
DRR006521	Root Winter glycyrrhizin high producing strain	2.711
DRR006522	Root Winter glycyrrhizin high producing strain	2.669
DRR006523	Root Summer glycyrrhizin low producing strain	10.849
DRR006524	Root Summer glycyrrhizin low producing strain	10.986
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.300
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.213

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	30.194
SRR2868004	Drought Stress (root)	20.313
SRR2967015	Control (root)	21.567

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.625
SRR9715740	Leaf	9.388
SRR9715741	Leaf	4.415
SRR9715739	Root	8.311
SRR9715742	Root	8.298
SRR9715743	Root	7.235

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	47.848
SRR8749028	MeJA induced 9h	22.959
SRR8749029	MeJA induced 9h	40.724
SRR8749030	Uninduced	7.347
SRR8749031	Uninduced	7.064
SRR8749032	Uninduced	7.541

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	24.812
SRR8400027	Control - Root	25.270