Gene detail

Gene detail information of Glyur000261s00014353

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G20330.1	6.00E-143	PYRIMIDINE B
NR	Q43087.1	0	RecName: Full=Aspartate carbamoyltransferase 2, chloroplastic; AltName: Full=Aspartate transcarbamylase 2; Short=ATCase 2; Flags: Precursor [Pisum sativum]
COG	YP_003320102.1	3.00E-113	aspartate carbamoyltransferase [Sphaerobacter thermophilus DSM 20745]
Swissprot	tr\|Q43087\|PYRB2_PEA	0	Aspartate carbamoyltransferase 2, chloroplastic (Precursor)
trEMBL	tr\|B9V281\|B9V281_MEDTR	0	Plastid aspartate carbamoyltransferase {ECO:0000313\|EMBL:ACM47215.1}

Sequence

Transcript Sequence

>Glyur000261s00014353.1
ATGGCTGCTTCATCTTCCCATTTCTCCTGCTCAATGCATATGGAGGTGCTTGCGCCAAAGATATCAAAATGGCCTAATGATTCTGGTCAGAAATTTCAACTTGATGATGTTATTGAAGCGCAACAGTTTGATAGAGATATTCTCAATGCCATTTTTGAAGTTGCACGGGATATGGAGAATATCGAAAAGAATTCTCCTGGTAGCCAGCTTTTAAATGGTTATCTTATGGCTACCCTATTTTATGAGCCTTCTACTAGAACTAGACTTTCATTTGAGTCTGCCATGAGAAGACTAGGTGGAGAGGTTTTAACAACTGAAAATGCGAGAGAATTTTCATCCGCAGCTAAAGGAGAGACACTTGAAGATACAATAAGGACAGTTGAGGGTTACACTGACTTAATTGTGATTCGACACTTTGAAAGTGGTGCTGCCAAAAGAGCTGCAGCTATTGCTGGCATTCCGATAATCAATGCAGGGGATGGTCCTGGACAACATCCGACCCAGGCACTTTTGGATGTCTATACCATTGAAAGAGAGATTGGAAAGCTTGATGGTATAAAAGTTGGGCTTGTGGGAGACCTAGCTAATGGGAGGACAGTTCGTTCACTGGCATACTTGCTTGCAAAGTACAAGGATGTAAAAATATATTTTGTCTCTCCTGATGTGGTGAAAATGAAGATTTATGAGTATGCTTGCTATGAGGATGATATAAAGGACTATTTGACATCAAAGGGAGTGGATTGGGAAGAAAGTGCTGATTTGGTGGAAGTGGCCTCGGAGTGTGATGTGGTTTATCAGACTCGTATCCAAAAAGAAAGATTTGGAGAAAGACTTGACCTTTATGAAAAGGCTAGAGGCAAGTACATTGTGAATCAGGATATTCTCAAGGTGATGCAGAGACATGCTGTGGTTATGCACCCTCTTCCAAGACTCGATGAAATCACTGTGGATGTTGATGCTGATCCAAGGGCTGCTTACTTTAGGCAGGCCAAATATGGTCTATATATTCGGATGGCTCTTTTGAAACTCTTGCTTGTTGGGTGGTAATTACCTTTGCATTCATCTTCAAAATGTATGGAAGATGCTGAACATCAATCATATCTCCTTTTGCTTTTGGTTGTCCCATCCTTTAAAATGTTCTCCTTTTGCTTTTCATTGTACTTTCTAATCTTATAATAATAGGTCTTACAATGGGAAAGAGGAGTGCTAGAAGTTAATACAGAGATATATATTGCATGTGTTCTTGACAGCATGTTACAAATTTTAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00261	75487	78463	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00609	pyrB, PYR2	EC:2.1.3.2	Pyrimidine metabolism	map00240
			Alanine, aspartate and glutamate metabolism	map00250

Gene Ontology

biological_process

GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process

GO:0006520 cellular amino acid metabolic process

molecular_function

GO:0004070 aspartate carbamoyltransferase activity

GO:0016597 amino acid binding

GO:0016743 carboxyl- or carbamoyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000261s00014353.1	PF02729.16	OTCace_N	36	178	1.60E-43
Glyur000261s00014353.1	PF00185.19	OTCace	184	344	7.50E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.843
SRR1783600	control	8.695
SRR1783602	moderate drought stress	9.335
SRR1811619	moderate drought stress	9.621

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.659
DRR006520	Root Summer glycyrrhizin high producing strain	19.928
DRR006521	Root Winter glycyrrhizin high producing strain	17.327
DRR006522	Root Winter glycyrrhizin high producing strain	17.117
DRR006523	Root Summer glycyrrhizin low producing strain	21.482
DRR006524	Root Summer glycyrrhizin low producing strain	22.607
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.619
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.605

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.428
SRR2868004	Drought Stress (root)	30.123
SRR2967015	Control (root)	27.582

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.309
SRR9715740	Leaf	21.040
SRR9715741	Leaf	24.437
SRR9715739	Root	8.104
SRR9715742	Root	16.524
SRR9715743	Root	17.478

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	24.374
SRR8749028	MeJA induced 9h	11.945
SRR8749029	MeJA induced 9h	16.035
SRR8749030	Uninduced	5.260
SRR8749031	Uninduced	4.343
SRR8749032	Uninduced	3.806

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.799
SRR8400027	Control - Root	17.603