Gene detail

Gene detail information of Glyur000261s00014345

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G30950.1	FtsH extracellular protease family
NR	XP_004504668.1	PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic-like [Cicer arietinum]
COG	YP_007108388.1	membrane protease FtsH catalytic subunit [Geitlerinema sp. PCC 7407]
Swissprot	tr\|O80860\|FTSH2_ARATH	ATP-dependent zinc metalloprotease FTSH 2, chloroplastic (Precursor)
trEMBL	tr\|Q2PEV7\|Q2PEV7_TRIPR	Putative zinc dependent protease {ECO:0000313\|EMBL:BAE71245.1}

Sequence

Transcript Sequence

>Glyur000261s00014345.1
CGTAAGTCTTTCCCGAACCACAGCCACTCCCTCTAAAACCACACACCTTCCCTCTGCACCAGAGAGGTTCATAGCTTCCACCTCTTCTCTTCAATTCCACTCTCTCGTTTCTCTATTACATTTCACTTTTAAGATGGCAGCATCATCAGCATGTCTTGTTGGGAATGCTTTATCCACACGGAGTAACAGAATTACTCTTGGCAAGGACTTCAATGGAAGATACCTCTTCTCATCTTGGAGACTTTCATCATTGAATAAGGCTTCAAAAGCATTTCCCATAAAGGCATCCTTGGACCAAAAGCAGCAGGATGGGAGAAGGGGGTTTCTGAAATTGTTGCTTGGAAATGCTGGACTATTGGGAGGTGGCAAAGCTTATGCTGCTGAGGAACAAGGGGTTTCCTCCTCCAGAATGTCTTATTCCAGGTTTCTAGAGTATTTGGACAAGGACAGAGTTCAAAGAGTGGATCTGTATGAGAATGGAACCATAGCTGTTGTTGAGGCTGTTTCTCCTGAGTTGGGTAATCGGGTGCAGCGCGTTAGAGTTCAACTTCCTGGACTTAGCCAAGAGCTCCTTCAGAAATTCAGGGAAAAAAACATTGACTTTGCAGCTCACAATGCCCAAGAAGATTCGGGTTCTCTTTTGTTTAACCTGATTGGGAATCTGGCTTTCCCTCTAGCTGTGATTGGAGTATTGTTCCTTCTCTCAAGACGACCTGGTGGGATGGGAGGTCCCGGTGGGCCTGGATTCCCTCTTGCTTTTGGTCAATCTAAAGCCAAGTTTCAAATGGAACCAAACACTGGAGTGACATTCGATGATGTTGCTGGGGTGGATGAAGCCAAGCAGGATTTTATGGAGGTGGTGGAATTTCTCAAGAAGCCTGAGAGGTTCANTGCTGTCGGGGCTCGCATACCGAAAGGAGTTCTTCTCGTTGGTCCTCCAGGAACTGGGAAGACCCTGTTAGCCAAGGCCATTGCCGGTGAGGCTGGTGTTCCATTTTTCTCTATATCAGGTTCTGAGTTTGTTGAGATGTTTGTTGGTATTGGTGCTTCTCGTGTCCGTGATTTATTCAAGAAGGCCAAAGAGAATGCCCCTTGCATTGTCTTTGTTGATGAAATTGATGCCGTTGGAAGACAAAGAGGGACTGGAATTGGTGGGGGGAATGATGAAAGGGAACAGACCCTCAACCAACTTTTGACAGAAATGGATGGGTTTGAGGGTAATACTGGTATCATNGTCATTGCAGCGACAAACAGGGCTGACATTCTTGACTCTGCCTTATTGAGGCCCGGCCGGTTTGATAGACAGGTGACAGTTGATGTTCCAGATATAAAGGGAAGGACTGAAATCCTAAAGGTTCATGCCAGCAACAAAAAGTTTGATGCTGATGTTTCTCTTGATGTAATTTCAATGAGAACACCTGGTTTTAGTGGAGCTGATCTTGCAAATCTCTTGAACGAAGCTGCTATATTAGCTGGTCGGCGAGGAAAGACAGCAATTTCATCCAAAGAGATTGATGATTCTATTGATAGGATTGTGGCTGGAATGGAAGGAACAGTGATGACAGATGGGAAGAGCAAAAGTTTAGTGGCATATCATGAAGTTGGACATGCCATTTGTGGAACATTGACTCCTGGTCATGATGCTGTACAAAAGGTAACACTAATTCCTCGTGGTCAAGCTCGGGGTCTTACATGGTTCATTCCTTCCGATGACCCAACTCTGATCTCTAAACAACAACTCTTTGCAAGAATTGTTGGAGGCCTAGGTGGTAGGGCTGCAGAGGAAGTTATTTTTGGTGAGCCTGAGGTTACAACTGGAGCAGCCGGTGATTTGCAGCAAATCACTGGTTTGGCAAAACAGATGGTAACCACATTTGGAATGTCTGATATTGGTCCTTGGTCACTTATGGACGCATCGGCACAAAGTGGGGATGTTATCATGAGAATGATGGCAAGGAACTCAATGTCAGAAAAGCTTGCAGAAGACATTGATGCTGCTGTCAAGAGGTTATCAGATGAAGCATATGAAGTTGCATTGGGACATATAAGGAACAACCGTGAGGCAATTGATAAGATTGTGGAAGTCCTTCTGGAGAAGGAGACATTGAGTGGAGATGAATTCCGCGCTCTACTCTCTGAATTTGTTGAAATTCCAGTCGAAAATCGTGTCCCTTCTTCAGCTCCATTACCAGCAACTGTTTGAAATTGAATGGCCTATTTCTAGTATCATTAATATGTATAATCTCAGAATCCCTCTACAGCCTGCTTCAAATTTGTGAATGNCAAGCTTGTAGCTTACATTTTCATTTTTATAGTGTTGACAATGACAACAGACAGTATATATACCAAAGAGCAAATGTTTGAGTGTATGCATTGTTTCTTTCTTTACATATATCATACAGTATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00261	27169	30660	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0004222 metalloendopeptidase activity

GO:0005524 ATP binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000261s00014345.1	PF06480.10	FtsH_ext	89	159	3.20E-06
Glyur000261s00014345.1	PF00004.24	AAA	263	394	1.60E-44
Glyur000261s00014345.1	PF01434.13	Peptidase_M41	457	666	3.40E-77
Glyur000261s00014345.2	PF06480.10	FtsH_ext	103	173	3.10E-06
Glyur000261s00014345.2	PF00004.24	AAA	277	408	1.70E-44
Glyur000261s00014345.2	PF01434.13	Peptidase_M41	471	680	3.50E-77

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.879
SRR1783600	control	3.915
SRR1783602	moderate drought stress	3.378
SRR1811619	moderate drought stress	3.478

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.779
DRR006520	Root Summer glycyrrhizin high producing strain	10.845
DRR006521	Root Winter glycyrrhizin high producing strain	7.509
DRR006522	Root Winter glycyrrhizin high producing strain	7.087
DRR006523	Root Summer glycyrrhizin low producing strain	10.119
DRR006524	Root Summer glycyrrhizin low producing strain	10.510
DRR006525	Leaf Summer glycyrrhizin high producing strain	522.164
DRR006526	Leaf Summer glycyrrhizin high producing strain	519.764

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	30.118
SRR2868004	Drought Stress (root)	29.332
SRR2967015	Control (root)	21.660

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	451.222
SRR9715740	Leaf	764.227
SRR9715741	Leaf	295.634
SRR9715739	Root	8.173
SRR9715742	Root	11.561
SRR9715743	Root	10.531

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.635
SRR8749028	MeJA induced 9h	11.340
SRR8749029	MeJA induced 9h	9.241
SRR8749030	Uninduced	2.930
SRR8749031	Uninduced	1.621
SRR8749032	Uninduced	2.766

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.016
SRR8400027	Control - Root	20.074