Gene detail

Gene detail information of Glyur000260s00013548.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G64210.1	6.00E-134	Leucine-rich repeat protein kinase family protein
NR	KEH21182.1	0	LRR receptor-like kinase [Medicago truncatula]
COG	YP_004775215.1	2.00E-16	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9SUQ3\|Y4374_ARATH	0	Probable inactive receptor kinase At4g23740 (Precursor)
trEMBL	tr\|A0A072TUR7\|A0A072TUR7_MEDTR	0	LRR receptor-like kinase {ECO:0000313\|EMBL:KEH21182.1}

Sequence

Transcript Sequence

>Glyur000260s00013548.1
ATGGAATTTGCACGCATTTTATCTTCCATTTACCTATTATTGGGTTTGGGTTTGTTTCTATGGCAACAACGAGGGAATTGCGAACCAGTTGATGACAAGGAGGCATTGCTTGAGTTTGTGAACAAGTTTCCTCCTTCACGGCCTCTGAATTGGAACGAGAGCTTTTCAGTTTGTGCTACTTGGACTGGAGTGACTTGCAATGAAGATGAGTCTCGTGTAATAGCCATTCGATTGCCAGGTGTAGGATTTCACGGAACAATCCCACCCAACACCATTAGCCGCCTCTCAGCGCTACAAACTCTGAGCCTCAGATCCAACGTGATAACTGGGCATTTCCCTTGTGATTTCCCCAATCTAAAAAACCTGTCTTTCCTCTCTCTTCAGTTCAACAACTTGTCGGGTCCATTGCCAGATTTCTCAGCTTGGAAGAACCTCACTGTTGTCAATTTGTCCAATAACAATTTCAATGGCAGCATTTTTGTGTCCCTTTCCAATCTCACTCAGCTTACTGGTTTAAACCTTGCAAACAACTCTCTCTCTGGTGAGATTCCTGATCTCAACTTGCCCAGGTTGCAGCTGCTGAATTTGTCCAACAACAACTTGCAGGGGACTGTGCCTAAATCCCTCCAGAGGTTTCCTTATTCAGCATTCTCTGGGAACAAAAACATATCTATTGCAAGTTCAAATTCAAGTTCTCCTGCAGTTGTTGTTCCTCCGGTGCCTCCACCGGTTTATGANCCATCTTCAACAACATCTGAGAAACGTGGGAGGCTCAGTGAAACGGCACTGATGGGGATTGNTGTTGCCGGTAGTGTTCTAGGCCTTGTGGCATTTGGTTTCTTGTTGTTTGTGTGCTGCTGCACAAGAAGAAGGGGNGAAGAATATGAGGATGATGCCGCCTTTGGTGGGAAATTGAGGAAGGGAGAGATGTCTCCGGAAAAGGCGGTATCGAGGAACATGGATGCAAATAATAAGCTTGTTTTCTTTGAGGGGTGTAATTATGCATTTGATTTGGAGGATTTGTTGAGGGCTTCTGCTGAGGTGNTGGGAAAGGGAACATTTGGTACTGCGTACAAGGCNATACTAGAGGACGCAACCACGGTTGTTGTGAAGAGGTTAAAGGAGGTGGCTGTTGGGAAGAAGGATTTTGAGCAATACATGGAGATTGTGGGGAGTCTTAAACATGAGAATGTAGTTGAGCTGAAGGCATATTACTATTCCAAAGATGAGAAACTGATGGTATATGATTACTTCAGCAAAAGAGGAGAGGAGAGGGTTCCTTTGGATTGGGATACTCGGTTGAGAATAGCTTTAGGTGCTGCAAGAGGCATTGCTCGAATCCATGTTGAGAATGGCGGTAAACTTGTACACGGCAACATAAAGTCCTCAAATATCTTTCTCAATAGTAAACAGTACGGCTGTGTATCTGATTTTGGCCTGGCAACCTTATCAAGCTCGCTCGCCCTACCCATCTTGCGAGCCATCGGTTACCGAGCACTGGAAGTCACGGACACGAGGAAAGCAGCGCGACCTTCAGATGTTTACAGCTTTGGTGTGGTGTTACTAGAGCTTCTGACTGGGAAATCCCCTATCCACACAACTGGTGGTGATGAAATCATCCACCTTGTGAGGTGGGTTCATTCAGTTGTGAGAGAGGAATGGACAGCTGAAGTGTTTGCCTTGGAGCTCATGAGATATCCAAATATAGAAGAAGAGATGGTGGAGATGTTACAGATAGCCATGTCATGTGTGGTAAGGATGCCTGATCAGAGACCTAAGATGTCCGAAGTCGCGAAGATGATAGAAAATGTTAGACAAATTGATAGAGAGACTCAACCATCATCTGAGAACCAAGCAGAGGTTAAAACATCTCAACGTGAGAATGATGATAACTCATCCCCCTTCCACTCCATCCCCCTTCCCAAAAGGAAGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00260	203816	207178	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.13.3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000260s00013548.1	PF08263.7	LRRNT_2	31	67	2.50E-08
Glyur000260s00013548.1	PF00560.28	LRR_1	98	119	0.47
Glyur000260s00013548.1	PF00560.28	LRR_1	190	211	0.049
Glyur000260s00013548.1	PF00069.20	Pkinase	347	599	2.30E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.881
SRR1783600	control	0.844
SRR1783602	moderate drought stress	0.447
SRR1811619	moderate drought stress	0.472

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.390
DRR006520	Root Summer glycyrrhizin high producing strain	1.216
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.544
DRR006524	Root Summer glycyrrhizin low producing strain	0.451
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.406
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.363

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.496
SRR2868004	Drought Stress (root)	1.630
SRR2967015	Control (root)	2.756

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.263
SRR9715740	Leaf	2.609
SRR9715741	Leaf	0.648
SRR9715739	Root	1.176
SRR9715742	Root	1.866
SRR9715743	Root	0.958

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.478
SRR8749028	MeJA induced 9h	0.472
SRR8749029	MeJA induced 9h	0.301
SRR8749030	Uninduced	0.066
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.005
SRR8400027	Control - Root	2.298