Gene detail information of Glyur000260s00013541.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G21240.2 | 5.00E-86 | basic pentacysteine 4 |
| NR | XP_003525427.1 | 0 | PREDICTED: protein BASIC PENTACYSTEINE4-like isoformX1 [Glycine max] |
| Swissprot | tr|Q8S8C6|BPC4_ARATH | 9.00E-122 | Protein BASIC PENTACYSTEINE4 |
| trEMBL | tr|I1K6R5|I1K6R5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G38430.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00260 | 178046 | 181513 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | BBR-BPC |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000260s00013541.1 | PF06217.7 | GAGA_bind | 1 | 317 | 4.70E-102 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.531 |
| SRR1783600 | control | 16.474 |
| SRR1783602 | moderate drought stress | 21.756 |
| SRR1811619 | moderate drought stress | 21.616 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.974 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.739 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.403 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.068 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.203 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.059 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.040 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.051 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.116 |
| SRR2868004 | Drought Stress (root) | 11.333 |
| SRR2967015 | Control (root) | 11.884 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.770 |
| SRR9715740 | Leaf | 7.994 |
| SRR9715741 | Leaf | 6.837 |
| SRR9715739 | Root | 12.110 |
| SRR9715742 | Root | 10.264 |
| SRR9715743 | Root | 9.014 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 23.619 |
| SRR8749028 | MeJA induced 9h | 14.281 |
| SRR8749029 | MeJA induced 9h | 15.929 |
| SRR8749030 | Uninduced | 4.211 |
| SRR8749031 | Uninduced | 1.891 |
| SRR8749032 | Uninduced | 4.148 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 17.818 |
| SRR8400027 | Control - Root | 18.328 |