Gene detail

Gene detail information of Glyur000260s00013539.2

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G48820.2	Glycosyltransferase family 29 (sialyltransferase) family protein
NR	NP_001241929.1	uncharacterized LOC100783885 [Glycine max]
trEMBL	tr\|Q4JEZ7\|Q4JEZ7_SOYBN	Sialyltransferase-like protein {ECO:0000313\|EMBL:CAJ15143.1}

Sequence

Transcript Sequence

>Glyur000260s00013539.2
CAGATTCAATCTCCAGAGGTTGATAAACTCGAATTCATTTGTGCATTGAGTAGGTTCCGCTTCGCAAACTGAATCCGATGAGGGTTCTGCAACTCGGCTTTTTGCTTGCTTTGGCATCTGGTTTTGCAGCCATTTCCATTTACATCACCGGACTCTCTAATCTTTCTGTATATCCCACTCATCACCTCTCTGATGAAGACACGGAAGCATTGCTTTCGCTGCACAGCAGTTTCCAGAAGTGTGTGAGCGCAAATGGACTTGGTCTGAAAGCAGCTCGGGGCGGTGATTATTGTCAAACCACAATAAATTTCCCTAGTGACACCATCCCCAAATGGAGAGATCCCAAAACCGGTGAACTTGAAGCTCTATCTTTTGATTTTAATCTATGTGAAGCTGTGGCAACATGGGAACAGGTGCGGAACAGTACCACTATACTCACCAAGGAATTCATTGATTCTTTGCCAAATGGATGGGAGGAGTATGCATGGCGTAGGATCAATAAAGGAATACAACTGAACCGCTGCGAGAACAGGACCTTGTGCATGGAGAAACTTTCACTAGTGCTCCCTGAGACACCACCATACTTCCCTAGACAGTTTGGGCGCTGTGCTGTTATCGGTAATTCAGGAGATCTCTTGAAAACAAAATTTGGAAAGGAGATAGATGGTTATGATGCTGTCCTTAGAGAAAATGGTGCTCCGACACAGAACTACACTGATTATGTGGGTAGGAAAAGCACGTTTCGCCTTCTAAATCGAGGATCTGCCAAAGCATTGGATAAAGTTGCTGAATTAGATGAACAAAGAAAAGAAGTCTTGATAATAAAAACAACCATTCATGACATCATGAACAAAATGATCAAGGAAATTCCTATAAAAAATCCTGTATATCTCATGCTAGGTGCATCCTTTGGTTCAGCAGCAAAGGGAACTGGGCTTAAGGCTCTTGAATTTGCCCTGTCCATGTGTGATTCAGTAGATATGTATGGTTTCACTGTGGATCCTGGTTATAAAGAATGGACAAGATATTTCTCTGAATCTCGTCAGGGCCATACCCCATTGCATGGTAGAGCTTATTACCAGATGATGGAGTGCTTGGGACTGATCAAAATCCATTCTCCCATGCGAGCTGATCCAAACCGTGTTGTAAAATGGGTTCCAAGCCCCCATATTATAAGGGCTGCTAGGATTGCATCAGAGAAATTACTGAGGAGAGTTGGAGCAGGGTCTGAAGATCCATTGCGTGCATGTTCCGTAATTAAGAAGCAAGTTAAAAGAAATTTAAATGCAGTTTCAAAGCTCAGAAAAGCGGCACTTGATCATATGAGGTATGTGAAGAGCACAACTATGTATCCTCTGGAGCATAGTCCAGGACATGGGTTGCTTTGCACTGTGCCAACTGATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00260	156097	160332	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT29

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006486 protein glycosylation

molecular_function
GO:0008373 sialyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000260s00013539.2	PF00777.13	Glyco_transf_29	148	232	2.40E-26
Glyur000260s00013539.2	PF00777.13	Glyco_transf_29	237	347	5.10E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.325
SRR1783600	control	8.380
SRR1783602	moderate drought stress	6.552
SRR1811619	moderate drought stress	6.631

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.418
DRR006520	Root Summer glycyrrhizin high producing strain	9.282
DRR006521	Root Winter glycyrrhizin high producing strain	10.380
DRR006522	Root Winter glycyrrhizin high producing strain	10.267
DRR006523	Root Summer glycyrrhizin low producing strain	6.784
DRR006524	Root Summer glycyrrhizin low producing strain	6.374
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.709
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.551

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.572
SRR2868004	Drought Stress (root)	16.372
SRR2967015	Control (root)	16.864

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.069
SRR9715740	Leaf	9.296
SRR9715741	Leaf	8.885
SRR9715739	Root	1.308
SRR9715742	Root	4.222
SRR9715743	Root	4.991

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.862
SRR8749028	MeJA induced 9h	6.808
SRR8749029	MeJA induced 9h	4.031
SRR8749030	Uninduced	2.932
SRR8749031	Uninduced	2.230
SRR8749032	Uninduced	1.491

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.240
SRR8400027	Control - Root	18.458