Gene detail

Gene detail information of Glyur000260s00013538

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G50915.2	2.00E-37	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
NR	XP_003532431.2	1.08E-137	PREDICTED: transcription factor bHLH137-like isoform X1 [Glycine max]
Swissprot	tr\|Q93W88\|BH137_ARATH	4.00E-52	Transcription factor bHLH137
trEMBL	tr\|I1KP38\|I1KP38_SOYBN	4.00E-138	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G01210.1}

Sequence

Transcript Sequence

>Glyur000260s00013538.1
ATGGCAGCTTTTTCATACCCATACCATCCCTTTCTTGTTGACTCTGCATGCTTCCCCAATACTCCAATAATAAAAATGTCTTCTTTTGGGGAACAAGACCTTATAAACACTACCCTTCTTCCTCATCCTCATCTTTCTCACANTATTCATCAAGAACTCATCACTGCTAATCACGAAACTAGCTGTGTTGATCAAAGCTCTAAAATTACCAACAACAGTGATACTGAGGTTTCTGTTGTCAAAAACCAGAGTCCTGAGTCCTCCATGGTAGTTGACAAGCTTGAAAACGGTGAACAGGTCACTCAGAAGGTGATTCCTATGGAGAAGAAAAGAAGAACCAGAAATGGGTCTTCCTCCCTGAATAGCCCCTCATTTAAGGATTCAACAAAAGGGGGAAACAAAAATCAAAGGAAGAGCAGTGGTGGGGTGAAGGGAGGGGACAAACCAAAAGAAGAGAAGAAGAATCAGAAGAAAAGTCCTGAAGAGCCTCCAACAGGTTATATCCATGTCAGAGCAAGAAGGGGTCAAGCAACAGATAGCCACAGCCTTGCTGAAAGGGTTAGAAGAGAGAAAATAAGTGAAAGGATGAAGATATTGCATCAACTTGTGCCAGGCTGTGATAAGGTAACTGGAAAGGCCCTTGTGTTGGATGAAATAATCAATTATGTACAGTCCTTACAGAATCAAGTGGAGTTCTTGTCAATGAAACTTGCTTCAGTGCATCCCATGTTCTTTGACTTGGCAATGGACCAAGACACCACCCTCTTGGCTAGACCAGATCAGAAATTAAATAGCATGACAGCATCACCACTACCTTCTGTACCACTATGCAGCAGCTCCAACCAGCAGGCCACAGCTTTTGCTGATACAACCACCCTGACCACCACCAACACCTTCCCCACTTCTAATAGTGACTATCTTTTGGATTATTCATCTCCAGCTTTTCTTCAAGGACACNGGCCAAATCTCTTCTTGGAGTGTACCGGTGGTCCATTTTGGGACGCAGAAGACCAACGACAAAAGTTTCTTAATCCATATGGATTCGGCAACAATACATGTTCCTTAAATTAATATATCAATTTCACATAGCTGCCCCAACAAGGCTTCGAACATGTTGATTTATCGTTTCTAATATAGGCAGGGAAATTCCAAACACAAGTAGCAGAATCACTGAAGAAAGAGCACAAAAAAACAAATCCAATCTTGGTATCACTGTGTATTATCAAGCATACGAATCATTTGGAAGGGAAGGGGAATTCGGGCATTATGCATATATAAGAAAGACTATATGGCTTGGTTTTCCTAGTCCACTAGATTAAAGTGACATTTGAAACATGATGAATAAAGTGGAGCAAAATTAATGGATGAGGAAGCCAAAAGGACAGAAAATGCCGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00260	144831	147181	+

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000260s00013538.1	PF00010.21	HLH	180	227	1.00E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.075
SRR1783600	control	0.076
SRR1783602	moderate drought stress	1.556
SRR1811619	moderate drought stress	1.432

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.579
DRR006520	Root Summer glycyrrhizin high producing strain	1.460
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	2.254
DRR006524	Root Summer glycyrrhizin low producing strain	2.697
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.465
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.483

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.505
SRR2868004	Drought Stress (root)	1.161
SRR2967015	Control (root)	1.807

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.584
SRR9715740	Leaf	1.488
SRR9715741	Leaf	0.961
SRR9715739	Root	0.198
SRR9715742	Root	2.439
SRR9715743	Root	1.284

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.025
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.008
SRR8749030	Uninduced	0.385
SRR8749031	Uninduced	0.044
SRR8749032	Uninduced	0.071

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.119
SRR8400027	Control - Root	1.890