Gene detail

Gene detail information of Glyur000260s00013531

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G23720.3	0	dual specificity protein phosphatase family protein
NR	KHN17466.1	0	Dual specificity protein phosphatase 1 [Glycine soja]
COG	YP_007170729.1	3.00E-08	protein-tyrosine phosphatase [Dactylococcopsis salina PCC 8305]
Swissprot	tr\|Q75QN6\|DPHS1_ARATH	0	Dual specificity protein phosphatase PHS1
trEMBL	tr\|A0A072TU75\|A0A072TU75_MEDTR	0	Dual specificity phosphatase family protein {ECO:0000313\|EMBL:KEH20977.1}

Sequence

Transcript Sequence

>Glyur000260s00013531.1
CATGATTTGCTTTGCTGAACTGAAACCTTAATCTTCTCTAGTAGTGCCAAAGCCAAACTCACCCTTTTTCTCTATCCACTGATGTGACCCACTACCACACCACTGCTTGAACTGAAACTGAAACATGATGAAGTTTCTCTAGATCTTCTAATTGTACTATACTCTGTACCGTTTTGAACTAACTTCTTGTTGTCATACAAATACAATCTTTGTATTCTGCCAAGTTGTATTGGACAGTAGAACACTAGAACTTGAAGCTTCTGTTCTGTCTGTCGTGTGTTTCTCACTTCTCAGCTCCAAAATCTAATGTTATGTGAAGTGGGCATCATCATTATCATTACCACAATTCACAATTCACAAATCTCTTTTTCTCTTTCTCTCTCTCTCTCCCCTTAAAAAAAGCAGACTACTTTGTTGCCTGCTATTCCGTGCCATTTTTCCCTTGTAATTTTGACCTCGCATCATCCCCACAAAAAAAAAAAACCAAATATAATTTTATACCATATACCAATACACACATGGCAAAAGAGCAAAAGCAGGTTAACACTTAACACAAACACGCCTTCTTTCATATATGTATGCATAGCAACAACATAAATATACAAGAAAAATTAACAAACAACACCTTTGAATATGATACTTATATTCGTGTCACAATCATGATCATGACTTTAACTTTAGATCTTACATCACATGCATGGTTTGTAATGTTGATTTTATTGTTATTATGATCTGCACTCACTAGTAGTTATAGATCCATTATATTGGATCTGGCTACTCTTTTTACATTAACATCATATTTTTGCATGTGGGAATGGGCATTGCAGGGCAAAGACCAAGAGAAGGAATTGGAACTCGATAGCGACGAGGCTGAGACTGAGATTGAGGTTCCATTGCCTCTCACCGTGACTTCTCGGGCTTTGTATATGTTGGGAGATTTCACTGCAGGGCCTGCGTTTAGGTTCACGCAATGGCTCCAATTTGTTCGTAAACGCACTGCTAAGAATCGCTCTTCTGGCTTCCCTCACCGTCTTTCAACCACCATGCCTTCTACTTCTAGCATCAGAGAATCGATTGAGAATCCAAAATTTGAGGTGCACCCTGATCCAACAGAAATTAGCCTGTGGGAGAGGCTTGGGAAAGCTGCAATGTTGGATATTGAATCAAGCTCCTTTTCTTGGGACAATCTTTCTTCACTGCACCACACTGAACACAGCAGTAGCAATGAGCATTCNGAGGATGAAATGAACAAAGCTCTCGAGGTAACTGTAAATTCCGGAGGTGTTGTCTTCTTTGCCTTTTTCAATTGTCATGGGATTGCTGATGCGTTTCCAAAAGAAGCAGCAGCTGTTATAAAGATATCATCATCAAGAATGGCAACACAGTCTGAACGCCTTGGCTATGAATTTGCGAAGTGGATGGGAATCCAAACTCCACAGGCTAGAGTCATTCACTATACCAGTTTAGAATGGCAGCAAATAAAGGAAGCTGCAGAAAAAGCTAGAGAAGCGGCAAATTCTGAGGGTGATGAAATTGGTGAAGTGACATGTTTTGAACTTTTGGAAGCACTTGAGCTTAGCCGATGTCTCTTTTTTATGAGTTATGTACATGGTTCACCTTTGCTTGAAAACTCTAGTGCCTTTGAGTCACGGGAATCTAAAGAAAGAACATCAGAAGCTCTTGGCAGGGTACTGATGCTGGACCTAGTCATTAGAAATGAGGATAGGCTCCCTTGCCGCGAGCTTAGATGGCGTGGGAATTCTGCAAATTTGTTGTTGGCTGAAAAGTTGATCTCTGCAAATGCAGATGCACTAGAAGCAGCTTTTGATTCTGCAATTAATCGGTATAGACCGAAGGTGATTAGGGCGCTTCAAAAAGAAAGAAGGTCAACTTCAGTAGATTGCAGATTGCATTCTCGTGATCCTGGCTTGATGTCACAAGCCTCTGACCTTTCAGAGATCTCAGAATCACCAAGATCCACTGACATGAGTCTTAAAAGTCAAACATCAGGAGAATCAATGTCTTCTGACCTTAACATTGTAGCCATTGATTCTGGTGTTCCTCGGCGACCCCCTGCTGGAAAACGTGCAGATGATCAGGTTAATTATCCTAAGCTGGTTGAGTTGCTGATCAATAGTTCCGGGTATGCCTCAAACCTGTTATATGATATAACTGGAGGGAAATTAGGATATCCTCCACCAGAAGACATGGATACAACTGATGTACACACAAGTGACAAGAGAGCAGTAGTTCATGCATTCCGTACTGGTTTCCGTGCCGCTCTTAGGGATCTGCAGGGTTTTCATATATTCCTACTCACCCTTCACCAAAGACTTGATACTTTGTTGCGATTATTTATGAACATCATAAACAAAATATCTTCAGGGGAATCCGACAAAGAGGATTCATTGGTTCCTGACTCACCTTCACTGGCTGGTTGTGGTAGTTGTTCCTCTCCAACAAGTAAGGACAGGCTTGCTAATGATAACCATCAAGATTTTACTGATTCAGAATCACAGAGAACCGCTTCCAAGGCATCGTCTTCAAGTAATAGAGATTGTTGTGACTCGACTCCTGCATCAAGAGATGGTTGGCATGGAAAGTTCTATAAAGGAAATGGGGAGCCANATCGTAATCTCCGCTTGACAGCTAAGCTCCGTGACTTCCATAAATATGCCAAGGTTGATGCTGAATCTAGTAAAGAATTGGAACAGTGGAATGAAATGCTTAAAAATGATGCCATCAAGCTATGCCAGGAGAACAATTTCAACACAGGATTTTTTGAGGGTAGTGATAATAACAGTGCTGTTGATGCATATGAACTTAAGGTCAGACTTGAGCATATCCTTGAGAGAATTGCATTGATATCTGATGCTGCAAGTACAGAGAGACCATCTGCTGTTACAAGTAATTTGTTCATTGGTGGAGCACTGGCCGCAAGATCCGTATACACACTGCAATACTTGGGAATCACACATATTCTGTGTTTGTGTGCCAATGAAATTGGACAATCTGAATCTCAGTTTCCCGATATATTTGAATACAAAAATTTCTCTGTGTNCGACAGTGAAGATTTTAACATCACCAACATATTTGAAGAAGCATGTGATTTTATAGATCATGTTGAACAAACAGGTCAGAAAGTCTTAGTTCATTGCTTTGAAGGGAGAAGCAGAAGTGTTAGTGTGGTCCTTGCCTACTTAATGCTAAGGAAGAAATATACTTTATCAGAAGCATGGCAAGCTCTAAAGCGAGTTCACCGCCGAGCACATCCCAACGATGGTTTCGCGAAGCTACTACAGGAACTGGATGAAAAGCTACATGGGAAGGTTTCAATGGAGTGGCAGCAGCGGAAACCAACCATGAAAGTTTGCCCCATATGTGGGAAAAATGCAGGGCTAAGCAGCAGCTCACTNAAGCTACACTTGCAGAAATCACATAGAAAGCTATCATCTGGCAGTGTGGATAGTGCCATGACAATGGAAATCCAAAAGGCATTAACAGCTTTGAAGATTAGCCGTGGTGGGAGTGTTAGCCCCACACAAAGGTCGTCTCATTCAATAATAGATCCATAGAAACCACAAGTTGTTATATTTNACTCTGGCACCAAGTTAGAAATTGAGTGGGGTAAAATCTTGGCAACCTCTGCAGCCAATAGACACAAAGCATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00260	94674	100757	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006470 protein dephosphorylation

GO:0016311 dephosphorylation

molecular_function

GO:0008138 protein tyrosine/serine/threonine phosphatase activity

GO:0016772 transferase activity, transferring phosphorus-containing groups

GO:0016773 phosphotransferase activity, alcohol group as acceptor

GO:0016791 phosphatase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000260s00013531.1	PF09192.5	Act-Frag_cataly	103	401	3.50E-50
Glyur000260s00013531.1	PF00782.15	DSPc	706	836	1.30E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.685
SRR1783600	control	5.721
SRR1783602	moderate drought stress	4.861
SRR1811619	moderate drought stress	4.822

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.578
DRR006520	Root Summer glycyrrhizin high producing strain	4.520
DRR006521	Root Winter glycyrrhizin high producing strain	0.941
DRR006522	Root Winter glycyrrhizin high producing strain	0.888
DRR006523	Root Summer glycyrrhizin low producing strain	3.180
DRR006524	Root Summer glycyrrhizin low producing strain	3.219
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.203
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.139

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.095
SRR2868004	Drought Stress (root)	4.755
SRR2967015	Control (root)	5.261

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.229
SRR9715740	Leaf	0.745
SRR9715741	Leaf	1.145
SRR9715739	Root	0.458
SRR9715742	Root	3.370
SRR9715743	Root	3.481

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.613
SRR8749028	MeJA induced 9h	1.467
SRR8749029	MeJA induced 9h	1.090
SRR8749030	Uninduced	0.272
SRR8749031	Uninduced	0.450
SRR8749032	Uninduced	0.614

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.847
SRR8400027	Control - Root	9.465