Gene detail

Gene detail information of Glyur000260s00013528.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G62000.3	auxin response factor 2
NR	XP_003525433.1	PREDICTED: auxin response factor 2-like isoform X1 [Glycine max]
Swissprot	tr\|Q94JM3\|ARFB_ARATH	Auxin response factor 2
trEMBL	tr\|I1K6T1\|I1K6T1_SOYBN	Auxin response factor {ECO:0000256\|RuleBase:RU004561}

Sequence

Transcript Sequence

>Glyur000260s00013528.1
GGAAAATAAAAAAAGGAACTACAAGGTACAAGCGAACCATGGTTAAGTTGCGCGGGTGGTGTTAAATGCGCCCTCCCCACCCGTACTCTCATTACATTTGCATAACTCTGCCCGTCCATAGCACGACAACGCCATTTCCCAATAAAAACAGAGCAACTTTCCCGCGACCGTNAAGACAGACGCCGCTACGCACCCCGTCCAACCCATACTCGACGTCTGCTAACGCCGTTAGTTACTCCCTTACTCCCCTCGTGTTTCCGAGGAGCCGCCTTGTTTTTATTCATGAAAAAAAAAAACAAAGGAGAGGAAATGGCGTTGTTTGCGTTTCCCAAGCAGTGAAAGATGTTCACCGGTTGTAGCCGGTTGGAAAGGGCAGGTGGACCGGTAAACTCCGGTTTCGGAGACCGGTTAAGAATTTGACCGCGGTTAAAATGATTGTACGCTGTTTTGACCCACTCTATGGTTAAGTCCTCTCCTCCGACAGTAGTTCTGGTGCTGCGACCATTTATCAGCTGAGAGNAAAAGAAAAGAAAAAGATAGAGAGAGAAATAGAATTAGAAAGAGNGACAGAGAAAGCTAGAGAGGGAGAGAGAGAGTAGGTGAAAGGGGCAATTGAAGGCTGTGAGAGGTTTTTGGAATTGGTGTTGCTTTGGGGTTTTTTTTTCTCTCTTAGCGAGTTTTGAGAATTTGGATTTTGGATCAGGGGGTTGCGTTGCTGTGGTGTGGATTTTGGACTGTGAATTGCATGAGGGGTGTTTGTTNCGGATGAGAGATCTGTGAGAGAGAGAAGAAAAAAAAAAAGAGTTCATCAGAGGTATCGATGAAGGGAAATTCTGTGAACGGAAAAGGAGAAAGCAACTCTGGTGTCTATAACAACAACAGCAATAACGATGGTAGGAACGGAGCAGGAGAGGGTCAAAATGGTCCTTCTTCATCATCCCCAAGAGGTGGAGGCGTCGACGAATCAGGGAGCGGAACAGCACATGCCGGTTTACGATCTCCCACCTAAGATCCTCTGTCGGGTCGTCAACGTGATGTTGAAGGCGGAGCCAGACACGGATGAGGTGTTTGCTCAGGTTACTTTACTTCCGGAGCCAAATCAAGATGAGAATGCAGTGGAGAAAGAGGCTCCGCCGGCACCTTCCCCGCGATTTCATGTCCATTCGTTTTGTAAAACTCTGACTGCATCTGATACTAGTACCCACGGTGGGTTTTCTGTGCTGAGGCGACATGCCGATGAATGCCTTCCTCAGCTGACTAATTTAGGAATTTCCAGAGGTGAGAATGGGGAACTTCGAGTTGGTGTCAGGCGTGCAATGAGACAGCAGGGTAATGTTCCTTCCTCAGTTATCTCTAGCCACAGCATGCATCTTGGAGTCCTTGCAACTGCTTGGCATGCCATATTGACCGGGACCATGTTCACTGTTTATTACAAGCCTAGGACCAGCCCGGCTGAATTTATTGTTCCCTATGATCAATACATGGAGTCTCTAAAAAATAATTATACCATAGGTATGCGGTTCAAAATGAGGTTTGAGGGTGAAGAGGCTCCTGAGCAAAGGTTTACTGGTACCATTGTTGGAATTGAAGATGCTGACCCCAAAAGATGGCCAAAATCTAAATGGAGAAGTCTGAAGGTGAGATGGGATGAAACATCTAACATNCCTCGTCCTGAGAGAGTTTCCCCTTGGAAAATAGAGCCTGCTCTTGCTCCTCCTGCCCTGAATCCTCTTCCGATGCCCAGGCCTAAAAGACCTCGCTCTANTGCAATTCCATCATCCCCAGATTCTTCTGTTCTTACACGAGAAGCATCATCTAAAGTAAGCATAGACCCTTTGTCAGCTAGTGGGTTTCCAAGNGTCTTGCAAGGTCAAGAATTATCGACCTTGAGTAAGTTGGCAGAAAGCAACGAGCCTGACACTGCAGAGAAGTCTGTTGCATGGCCACCTGCAGCTGATGATGAAAAGATTGATGTTGTTTCTACATCAAGAAGGTATGGATCAGAGAGCTGGATGTCAATGGCAAGACATGAGCCAACATATTCAGATCTTCTTTCAGGCTTTGGTGGTGGCCATGGAAATCATTCTTCCCAACATCTATTTGTCGATCAAACTGGTCATGTAGCCAACCCCTGTAGGAAAAGTTTGTTGGATCGTGAAGGCAGCAAACATAATGTGCTTAGTACATGGCCTGCAATGCCATCTAGTCTTTCACTCAACCTCTTGGAGAATACAAAAGGTTCTGCGCAAGGTGGTGATACAACTTACCAAGTTCGAGGGAATATGAGGTATAGTGCATTTGGTGAATACTCTGTGCTTCATGGACATAAAGTTGAAAATCCACACGGCAACTTTATGATGCCACCGCCACCTTCAGCTCAATACGAGAGTCCTCATTCAAGGGAACTGTTGCCCAAACAAATATCCGCAAAAACATGTGATGTTGCAAAATCAAAAGATGGAGACTGTAAGCTATTTGGCATCTCACTTCTCAGTAACCCCATTGCACCAGAGCCTTCTACATCACAAAGAAATGTTCCAAGTGAGCCAGTTAGTCACATGCATCTTACATCACAACAACATCCCACATTTGAAAGTGATCAGAAGTCAGAGCATTCAAGGGGCTCAAAAGCAGCAGGTGATCTAGTTGTAGCTGATGACCANGAGAAGCTGTTACAGACTTCTCAGCCTCATCTTAAAGATGTTCAACTCAAACCTCATAATGGTTCTGCTAGAAGTTGCACTAAAGTTCACAAGAAGGGGATAGCACTTGGTAGGTCAGTGGACCTTACAAAGTTCAGTGACTATGATGAATTAATTGCTGAACTGGATCAGCTGTTTGAATTCGGAGGTGAATTAATTTCTCCACAAAAGGACTGGCTTGTTGTCTACACCGATAATGAGGGTGACATGATGCTTGTTGGTGATGATCCGTGGCAGGAGTTTTGTGCCATGGTCCGCAAAATTTATATCTACCCCAAAGAGGAGATTCAGAAAATGAGCCCGGGTACCTTGAGTTCAAAAAATGAAGAGAATCAGTCAGCTAGCGAAGGTGCAGAAGATGCTCAAGAAATTAAACGTCAGCTGCATCATTCCGCATCAGATGCCTGAGAATTCGTAGATATGATTTCGTAGCTTCCAGATTCCGGACTGGAGTGGAAAGTAAGTAGTAGGGGACAGACAGTCTTAAAGCCCTCCTGTTAGAGAATATGACCTGAAGAAGAAACTTCTAATTCTTGAGTTTGACCGCTTATCAAGTGAACTTGTTTGTGTTTGGAATCAGAATATGGATGGCAAAATGAGAATCCATCCAATTTTGGACCGTGTCGTGGAATTAGTAGGATTAGTATATATGGTTTCCCAGATATAGTATACTCCGAGTATATTATGTAAAATCTTGCTTAGAGCAAGGCGATATTGGGTTTATATGCCTTGCATTTTTCATCATTATCCTCCCGTGTACATAGTTACTCTCCCATCGCTAGGACGACTCCAACCCATTAATGTAATTTAAGTNGATATCCAAGGGCGGTTTATCTGATTTTAATTTTTGATTCTCTTATTTTAGTAGAAATTTGTGCTAATATGGTGAACTAGTGGAAATTATTGTGGATATTAATGTGCATTTTGCTAGATGTATAATTAAATTTTGNCTTGGATTGCACATGTGATGTCTCACTTGGTGTTTGGTGGGTGCGGTAATCATGTGGTAACTGGGTTTACGCGTGAGCGGCATAGATTGAAGTCCAAGTCATATCATGCAAGAGAAGAAAGTGGACACTTGGGTCTGGAAATGTTGATGGGGGATTTGAAAATTCGTAGTGAAATGTTAATAGTTGTGATGTGATTGCACTACTGGTTGGGGTGTGGTCCTCTCCCCCTTCCTGATATATTTTGTAACTGGGTTACGTGATAAAACTTCNTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00260	73453	79365	+

Gene family

Gene family	subfamily
EAR motif-containing Proteins	other

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006355 regulation of transcription, DNA-templated

GO:0009725 response to hormone

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003677 DNA binding

GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000260s00013528.1	PF06507.8	Auxin_resp	167	249	5.30E-35
Glyur000260s00013528.1	PF02309.11	AUX_IAA	595	705	2.30E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	69.334
SRR1783600	control	69.118
SRR1783602	moderate drought stress	93.984
SRR1811619	moderate drought stress	93.136

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	79.568
DRR006520	Root Summer glycyrrhizin high producing strain	78.496
DRR006521	Root Winter glycyrrhizin high producing strain	65.977
DRR006522	Root Winter glycyrrhizin high producing strain	64.151
DRR006523	Root Summer glycyrrhizin low producing strain	90.550
DRR006524	Root Summer glycyrrhizin low producing strain	90.373
DRR006525	Leaf Summer glycyrrhizin high producing strain	28.227
DRR006526	Leaf Summer glycyrrhizin high producing strain	27.989

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	66.676
SRR2868004	Drought Stress (root)	93.327
SRR2967015	Control (root)	101.081

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	55.316
SRR9715740	Leaf	48.912
SRR9715741	Leaf	74.601
SRR9715739	Root	30.885
SRR9715742	Root	106.207
SRR9715743	Root	92.730

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	68.028
SRR8749028	MeJA induced 9h	61.715
SRR8749029	MeJA induced 9h	92.761
SRR8749030	Uninduced	114.087
SRR8749031	Uninduced	90.459
SRR8749032	Uninduced	60.109

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	86.653
SRR8400027	Control - Root	90.349