Gene detail

Gene detail information of Glyur000260s00013525

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G61980.1	0	ARF-GAP domain 1
NR	KEH20975.1	0	ADP-ribosylation factor GTPase-activating protein AGD10 [Medicago truncatula]
COG	YP_004150925.1	1.00E-13	Ankyrin [Thermovibrio ammonificans HB-1]
Swissprot	tr\|Q9FIT8\|AGD1_ARATH	0	ADP-ribosylation factor GTPase-activating protein AGD1
trEMBL	tr\|A0A072U557\|A0A072U557_MEDTR	0	ADP-ribosylation factor GTPase-activating protein AGD10 {ECO:0000313\|EMBL:KEH20975.1}

Sequence

Transcript Sequence

>Glyur000260s00013525.1
ATGCATTTCGCAAATCTGGAAGACACTCCTATGTTCCGCCAACAGCTCCAGTGCTTGGAGGAAAGTGCAGAATCGTTGCGCGTGAGGTGCAGCAAGTTCTACAAAGCATGTCGAAAGGAAGGGCTTGGAGAGGCCTATGACGGGGACATTTCATTTGTAAGTTCCCTTGAAAATTTTGGAGGAGGGCATAATGATCCTCATTTCGTTGCTCTGGGAGGACCTGTAATGACCAAATTTACTATTGCTTTGAGAGAAATCAGTACATACAAGGAACTTCTTCGGTCACAAGTAGAGCATATGCTTGATGACCGGTTACTGCACATTGTCAATGTTGACATCAACGAAGTCAAGCGATGCTTGCAGGAAGCTCGTAAGCGTTTTGACAAAGCTTCCCTTGTATATGACCAGGCACGTGAAAAGTTTATGTCTCTGAGAAAAAGCACCAAGATTGATATTGCCACTGTCATAGAAGAGGAAATGCAGAATGCAAGATCATCTTTTGAGGAAGCCCGTTTCAATCTGGTTGGTGCTCTTAATAACATTGAGGTCAAAAAGAGATTTGAGTTTTTAGAGGTTGTCACTGGAATTATGGATGCTCATCTTCGATACTTTCAACAGGGATATCAGCTATTACATCAGATGGAACCTTTCATTGGCGAGGTTTTGGATTATGCACAACAGTCAAGAGAAAATTACAACAAGGAGCAGATTTCACTTTATAAAAGAATGCAAGAATACAAAAGACAAGTTTATCAAGAAAGTAGGTTGTCCTTGAATGGCCCGTGTGGTTCTCCTAGTGGAGACTGCGCGCATCCTTTTTCTAGGATATCAAATGAAGTGGTAGATGTAGTAAAGGAATCTGCTGCAAGTGGAAAGGTTCAAATCATTCGACAAGGATATCTTTCAAAACGATCCTCCAATTTGAGAGGTGACTGGAAAAGAAGTCGAGGAATGTTGTACTACTACCGCAAACCATGGAATATGTCATATGTAAGTCTCCAACCAAACTCAACTTTTAATACACTAAGCCAGGGCAGCAATCAACCATCTCCAAGGAGGAATAGTTCCCCTGAAAATGGTTCTGGGCTTCTGAGTCGATGGCTTTCTTCTCATTACCATGGGGGTGTCCATGATGAAAGATCTATAGCACGTCATACAGTAAACCTGCTGACGTCAACAATCAAGGCTGATGCTGATCAGTCAGATTTAAGATTTTGCTTCAGAATTATTTCGCCATCGAAGAACTATACACTGCAGGCAGAAAATGCCGTGGACCAGATGGATTGGATGGAAAAGATAAACGGAGTAATTGCCTCCTTGTTGAGTGTCCAGACACTGGGAACGCCTCACTCAGCTGACTCAGAGCACGGCGACTCTTACTTTAACGACAATAGTGATGTGTTAGAAAGTTCTCCAGATGATGATCGCACTGAGACCGAGAAGTCTGCATCCAAGAATTTCACCCCTAATAACCACTTACGGTTGTCTAAAAGTTTGCAGTTGCATAAACACGGTATAAGAAATGAAAACCCAATTGGTGTTCTTAGAAGAGTGAGCGGGAATGACAAATGTGCTGACTGTGGTAAACCTGAACCAGACTGGGCATCTTTAAACCTCGGCATCCTTGTATGCATTGAATGTTCTGGTGTTCATCGTAATCTTGGTGTACATATTTCAAAAGTAAGATCACTGACACTTGATGTGAAAGCCTGGGACCCCGCTGTCTTAAGTATGTTTGAGTCCATAGGCAATCTTTTTGCAAACTCAGTTTGGGAGGAGCTGTTACATTCAAGGAGTACTTTGCAAACTGTTGACACCCCTGTTGGTTCATCCAAGGAAAACAGAGACAACCTATTTCATGCAAGAAAACCAACACATGACGATTCTATTTCATTAAAGGAGAGGTTCATTCACGCAAAGTACCATGAAAAAATATTTGTTCACCGGACGAAGAAAAACCACCCTCTCCTTTCGTTGGGACAACAGATGTTGGAGAGCATCTGTGCCAATGACAAGAAAGCAGTATACCAGCACATTATCAAGTCGGATGCAGATGTCAATGCCATCAGTAGACAAGCATTATCCGGTGACTCTTCCAACACGGCTTCTTTAAGTAATCTAAACATTCCATTTCAAAGTGGAAATCAGTTGATTGAAGACATACAAGATGGTTCTGGTGTTCTTCACCTGGCGTGCCTAACAGGTGACATTGGCATGGTTGAGCTGCTCCTACAGCATGGGGCAGATATAAACGCCTGTGATTCAAGAGGTCAGACACCACTACATTACTGTATTATCAGAGGGAAAAGCGCAGCTGCGAAAGTGCTTATTATGAGGGGGGGCAATCCACATGTCGCGGATAAAGAGGGCAACACTCCGCTTAAGCTCGCATCAGAATCCGGGTCTGTTGGCAATGAAATTCTCCCTCTCTTATCAAGCAGATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00260	44962	54738	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0005096 GTPase activator activity

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000260s00013525.1	PF03114.13	BAR	74	216	1.50E-10
Glyur000260s00013525.1	PF00169.24	PH	295	436	2.30E-07
Glyur000260s00013525.1	PF01412.13	ArfGap	514	648	1.30E-33
Glyur000260s00013525.1	PF12796.2	Ank_2	728	803	2.10E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.637
SRR1783600	control	2.714
SRR1783602	moderate drought stress	2.330
SRR1811619	moderate drought stress	2.299

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.782
DRR006520	Root Summer glycyrrhizin high producing strain	1.795
DRR006521	Root Winter glycyrrhizin high producing strain	0.400
DRR006522	Root Winter glycyrrhizin high producing strain	0.493
DRR006523	Root Summer glycyrrhizin low producing strain	0.756
DRR006524	Root Summer glycyrrhizin low producing strain	0.854
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.130
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.081

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.155
SRR2868004	Drought Stress (root)	4.035
SRR2967015	Control (root)	4.419

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.305
SRR9715740	Leaf	0.514
SRR9715741	Leaf	0.626
SRR9715739	Root	0.201
SRR9715742	Root	0.507
SRR9715743	Root	0.451

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.564
SRR8749028	MeJA induced 9h	7.639
SRR8749029	MeJA induced 9h	6.155
SRR8749030	Uninduced	6.602
SRR8749031	Uninduced	6.644
SRR8749032	Uninduced	5.158

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.841
SRR8400027	Control - Root	3.469