Gene detail

Gene detail information of Glyur000260s00013521

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G33550.1	2.00E-34	Homeodomain-like superfamily protein
NR	XP_004503841.1	0	PREDICTED: uncharacterized protein LOC101513291 [Cicer arietinum]
trEMBL	tr\|G7LIU0\|G7LIU0_MEDTR	0	Myb/SANT-like DNA-binding domain protein {ECO:0000313\|EMBL:AET05068.1}

Sequence

Transcript Sequence

>Glyur000260s00013521.1
ATGGAACCAAATTCAGAGAAAGTTTGTGAAGGTGGCGCTGACTCTGAGTCTCCAACTACTCCAGTTGGAAGACAAGTACCAGCAGAGGCTGACCCCAAAAGTGAAAGAACCAAAGCCACAAGACACCCTCGATGGACCAGACAGGAGACACTTGTTCTCATAGAGGCCAAGAAAGTGGTGGAAAATGGAGAACAGATTTGCCGATACAGATCAACAACTTCAGGGTTAGTTCACACCGACCCAAAATGGGATTTGGTGTCATCATTGTGTCAGCAACATGGTGTCCAGAGAGGGGCCATTCAGTGTAGAAAAAGATGGGGCAATCTTCTCACTGACTTCAGGAAGATCAAGAAATGGGAGTCAAGTATTAAGGAGGAGGCAGAGTCGTTTTGGATAATGAGAAATGATGTGAGGAAAGAAAAGAAACTGCCAGGGTTCTTTGATGCGGTGGTGTACAATGTGTTGGATGGAGGGGTGTGCACTGCCGCTGCATTTCCATTGACACTGATCAAAATGACACCACCAAAAGCAGAGAATGCTGATCAAGTTGAAGGAGTACTGGCGCCAGAGCAGTGTAAGGAGGATGAGGAGAACGAGGAGGAGGACGATGAGGCCATTGTTGACAGTGAGAAAACGGGTTGGAGCACAGAGGAGGAAAATGTTGAGACAAACACGGATGGGAATAAGGTCAACGGTCCATTGAAAACACCAAATGCTAAGAAAATCGGCATTAGAGGGAGTCTCAAAATGACACCCCCACTTACACTGCNCAGTTCAGAGAGGCAGCAACAACCATCTTGCCAAGGGAACTACGATCCTGGCTGTCAGAGAGAACCTATATTCCATGAGGGGTACAAGAGAAGGAGACCATCACCAGACAATTCAGAAGACAACACAAATTTTGACGACAATGTCATCAACATGCTAAGGAGGAATAGTAACATACTGAAAGCTCATCTTGGAGCTCAGAACATAAACTACCAATTGGCAAGGGACCAGCAGAAGCAGCAAACAGACAGCTTAGTTGCAGCCCTTGGCAGGCTCACAGATGCCATCACAAAAATTGCGGACAAGCTGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00260	25505	26917	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000260s00013521.1	PF13837.1	Myb_DNA-bind_4	43	133	1.10E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.707
SRR1783600	control	0.759
SRR1783602	moderate drought stress	0.492
SRR1811619	moderate drought stress	0.364

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.162
DRR006520	Root Summer glycyrrhizin high producing strain	0.197
DRR006521	Root Winter glycyrrhizin high producing strain	0.413
DRR006522	Root Winter glycyrrhizin high producing strain	0.242
DRR006523	Root Summer glycyrrhizin low producing strain	0.205
DRR006524	Root Summer glycyrrhizin low producing strain	0.145
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.729
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.352

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.336
SRR2868004	Drought Stress (root)	1.722
SRR2967015	Control (root)	1.699

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.413
SRR9715740	Leaf	0.814
SRR9715741	Leaf	1.562
SRR9715739	Root	0.044
SRR9715742	Root	0.162
SRR9715743	Root	0.191

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.056
SRR8749028	MeJA induced 9h	0.780
SRR8749029	MeJA induced 9h	2.838
SRR8749030	Uninduced	1.412
SRR8749031	Uninduced	0.821
SRR8749032	Uninduced	0.665

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.534
SRR8400027	Control - Root	0.711