Gene detail information of Glyur000259s00016769 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G32640.2 | 1.00E-36 | Lycopene beta/epsilon cyclase protein |
| NR | BAF98233.1 | 4.07E-102 | CM0545.530.nc [Lotus japonicus] |
| COG | YP_720423.1 | 2.00E-23 | FAD dependent oxidoreductase [Trichodesmium erythraeum IMS101] |
| trEMBL | tr|B0BLJ7|B0BLJ7_LOTJA | 2.00E-102 | CM0545.530.nc protein {ECO:0000313|EMBL:BAF98233.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00259 | 226183 | 227378 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.751 |
| SRR1783600 | control | 0.778 |
| SRR1783602 | moderate drought stress | 0.421 |
| SRR1811619 | moderate drought stress | 0.411 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.405 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.363 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.167 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.340 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.576 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.913 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.316 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.309 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.565 |
| SRR2868004 | Drought Stress (root) | 3.822 |
| SRR2967015 | Control (root) | 2.529 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.010 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.725 |
| SRR8749028 | MeJA induced 9h | 3.374 |
| SRR8749029 | MeJA induced 9h | 1.690 |
| SRR8749030 | Uninduced | 1.286 |
| SRR8749031 | Uninduced | 0.612 |
| SRR8749032 | Uninduced | 0.719 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.000 |
| SRR8400027 | Control - Root | 0.029 |