Gene detail information of Glyur000259s00016768 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G32650.2 | 2.00E-29 | RmlC-like cupins superfamily protein |
| NR | BAF98232.1 | 2.68E-72 | CM0545.540.nc [Lotus japonicus] |
| COG | YP_004919183.1 | 5.00E-09 | hypothetical protein MEALZ_3944 [Methylomicrobium alcaliphilum 20Z] |
| trEMBL | tr|B0BLJ6|B0BLJ6_LOTJA | 1.00E-72 | Uncharacterized protein {ECO:0000313|EMBL:AFK45752.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00259 | 224384 | 224838 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000259s00016768.1 | PF05899.7 | Cupin_3 | 64 | 131 | 5.60E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.644 |
| SRR1783600 | control | 3.696 |
| SRR1783602 | moderate drought stress | 1.210 |
| SRR1811619 | moderate drought stress | 1.499 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.191 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.480 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.535 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.977 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.121 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 18.072 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.246 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.321 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.755 |
| SRR2868004 | Drought Stress (root) | 14.208 |
| SRR2967015 | Control (root) | 14.366 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.067 |
| SRR9715740 | Leaf | 0.283 |
| SRR9715741 | Leaf | 0.426 |
| SRR9715739 | Root | 0.057 |
| SRR9715742 | Root | 0.071 |
| SRR9715743 | Root | 0.186 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.428 |
| SRR8749028 | MeJA induced 9h | 2.021 |
| SRR8749029 | MeJA induced 9h | 1.584 |
| SRR8749030 | Uninduced | 0.890 |
| SRR8749031 | Uninduced | 0.370 |
| SRR8749032 | Uninduced | 0.051 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.360 |
| SRR8400027 | Control - Root | 0.915 |