Gene detail information of Glyur000259s00016754 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G55140.1 | 4.00E-36 | ribosomal protein L30 family protein |
| NR | BAF98596.1 | 2.29E-69 | CM0545.370.nc [Lotus japonicus] |
| COG | YP_003132320.1 | 3.00E-07 | 50S ribosomal protein L30P [Saccharomonospora viridis DSM 43017] |
| trEMBL | tr|B0BLA7|B0BLA7_LOTJA | 9.00E-70 | Uncharacterized protein {ECO:0000313|EMBL:AFK47535.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00259 | 153050 | 155069 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000259s00016754.1 | PF00327.15 | Ribosomal_L30 | 19 | 69 | 1.60E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 39.376 |
| SRR1783600 | control | 38.909 |
| SRR1783602 | moderate drought stress | 42.534 |
| SRR1811619 | moderate drought stress | 42.171 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 24.639 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 24.548 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 12.941 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 12.993 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 35.403 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 35.174 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.898 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.631 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 45.557 |
| SRR2868004 | Drought Stress (root) | 33.177 |
| SRR2967015 | Control (root) | 29.026 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 28.429 |
| SRR9715740 | Leaf | 34.250 |
| SRR9715741 | Leaf | 24.473 |
| SRR9715739 | Root | 26.350 |
| SRR9715742 | Root | 19.365 |
| SRR9715743 | Root | 21.228 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 114.725 |
| SRR8749028 | MeJA induced 9h | 69.817 |
| SRR8749029 | MeJA induced 9h | 104.804 |
| SRR8749030 | Uninduced | 40.749 |
| SRR8749031 | Uninduced | 25.641 |
| SRR8749032 | Uninduced | 36.356 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 43.091 |
| SRR8400027 | Control - Root | 38.776 |