Gene detail

Gene detail information of Glyur000259s00016751.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G33580.1	7.00E-112	Protein kinase superfamily protein
NR	BAI79278.1	0	LysM type receptor kinase [Lotus japonicus]
COG	NP_347044.1	3.00E-18	Ser/Thr protein kinase [Clostridium acetobutylicum ATCC 824]
Swissprot	tr\|O22808\|LYK5_ARATH	0	Protein LYK5 (Precursor)
trEMBL	tr\|D3KU01\|D3KU01_LOTJA	0	LysM type receptor kinase {ECO:0000313\|EMBL:BAI79278.1}

Sequence

Transcript Sequence

>Glyur000259s00016751.1
ATGAATATCTCAAGTGTCGCCACCACCACTATCACCGTGTTGTTGTTACTGATGAACCCAGAAACAACAACAGTACAAGGACAACAAGAGTACGTAAACAACAAGCAGCTAGATTGTGATAACCAATACAACTCTACATTAGGCAACATCTGCAACAGCATCACTTCATGCCAATCATACCTTACTTTCAAATCACACCCTCCCGAATACAACAACGCAACCTCAATTTCCCAACTCTTAAATTCCACACCTTCCCTCATTGCACAATCCAACAACATCATCGACGTTCAACAAACCATCCCCACCGACACCATGGTAACCGTTCCAGTCAACTGTTCCTGTTCCGGCAACAGAAAATTCTACCAATACAACTCTTCTTACACCTTGAAAATCCTTGGTGAAACCTACTTCACCGTCGCTAATAACACCTACCAGGCACTCACCACGTGTCAGGCACTCATGGAACAGAACCCCTATGACGAACGAAGCCTTGTTCCTGGCGAAAAGCTTCACGTGCCACTCAGGTGCGCTTGTCCAACTCAGAAACAGAGCGATGCAGGGTTCAAGTACTTGCTCACTTACTTGGTCTCTCAGGGTGAATCGGTTTCTTCCATTGCTGAGATCTTCGGTGTGGATGAACAGAGCATTTTGGAGGCGAACGAGCTTTCTTCTACCTCCGTTATTTTCTACTTCACACCGCTTTTGATTCCTCTCAAAACAGAGCCACCGAAGACGCTAAACAGAGTAGCCACCCCACCTGAGTCTCCGCCGCCGCCGCCACCGGCGACGGCGGATGACGGAGACTCCGACTCTTCCAAGAAGTGGGTCATCGTCGGTGTCTCCGTTGGGGTTGCCGTTTCGCTTATTGCAGCTCTCTCTGTGTTTTTCCTCTGTTTCTATCGCCGCCGCCGTCAACAGCCGCCGGTTCCGCCGCCGGCGGTTAAGCCTTTCTCGGATTCCGCTGACACCAAGAAGATGTCGGATACCACCACAACGAGCAATTCTTGGTCTCTTTCTTATGAGGGGATTCGCTTTGCGATTGAGTCGTTGACCGTGTACAAATTCGAGGACTTGCAAAACGCCACTGGGTTCTTCAGTGAAGAGAATAAGGTCAAGGGTAGTTCTGTTTATAAAGCTTCTTTTAAAGGTGATGATGCTGCTGTTAAGGTTCTTAAAGGTGATGTCTCATCTGAGATAAACATTCTGAAGAGGATCAACCATGCCAACATTATAAGGTTGTCTGGTTTTTGTGTCTACAAAGGTAACACCTATCTTGTGTATGAGTTTGCTGAGAATGATTCTCTTGATGATTGGCTTCACTCTGAGAAGAAGAACAAGTACCAGAATTCTGTGTCCCTTAGTTGGGTTCAGAGAGTTCAGATTGCTCATGATGTGGCTGATGCACTCAATTACCTTCATAACTATGCAAACCCTCCTCATATTCATAAGAATATGAAGAGTGGTAATGTTCTTCTGGGTGGTGATTTTAGAGCTAAAGTTTCAAACTTTGGGTTGGCTAGAGTTATGGAGAATCAAGATGGGGAAGATGGGGGGTTTCAATTGACAAGGCATGTGGTGGGTACTCAAGGTTACATGGCACCTGAGTATATTGAGAACGGTTTGATTACTCCAAAGATGGATGTTTTTGCATTTGGGGTTGTGATTTTGGAGCTTCTTTCAGGAANAGAAGCCACTGGTAAGAATGGTTCNGGGGAGAAGCTTCTGTCAGCAACTGTGAGTGAGGTTCTTGAAGGGGATAATGTTAGGGAGAAACTTAGAGGGTTCATGGATCCAAGTTTGAGGGATGAGTACCCTTTGGATCTTGCATATTCCATGGCTGAGATTGCTAAACGATGTGTTGCTCGTGACCTCAATTCAAGACCAAACATTTCTGAGGTTTTCATGGTTCTGTCTAAGATTCAATCCTCTACACTTGATTGGGATCCTTCTGATGAGCTTGAACGGTCCAGATCTGTTAGCCAAGTTTCTGATAGCAGATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00259	141858	143858	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.1.3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000259s00016751.1	PF01476.15	LysM	194	237	1.40E-06
Glyur000259s00016751.1	PF00069.20	Pkinase	376	633	4.50E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.656
SRR1783600	control	10.759
SRR1783602	moderate drought stress	7.108
SRR1811619	moderate drought stress	7.102

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	44.736
DRR006520	Root Summer glycyrrhizin high producing strain	43.918
DRR006521	Root Winter glycyrrhizin high producing strain	2.052
DRR006522	Root Winter glycyrrhizin high producing strain	1.965
DRR006523	Root Summer glycyrrhizin low producing strain	44.567
DRR006524	Root Summer glycyrrhizin low producing strain	44.548
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.317
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.643

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.144
SRR2868004	Drought Stress (root)	36.326
SRR2967015	Control (root)	43.886

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	87.601
SRR9715740	Leaf	63.179
SRR9715741	Leaf	122.235
SRR9715739	Root	156.787
SRR9715742	Root	228.769
SRR9715743	Root	206.182

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	39.783
SRR8749028	MeJA induced 9h	66.205
SRR8749029	MeJA induced 9h	32.673
SRR8749030	Uninduced	73.696
SRR8749031	Uninduced	70.455
SRR8749032	Uninduced	29.579

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.663
SRR8400027	Control - Root	35.383