Gene detail

Gene detail information of Glyur000259s00016749.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G32990.1	0	glycosyl hydrolase 9B8
NR	XP_003616918.1	0	Endoglucanase [Medicago truncatula]
COG	YP_007159459.1	2.00E-93	Cellulase [Anabaena cylindrica PCC 7122]
Swissprot	tr\|O48766\|GUN11_ARATH	0	Endoglucanase 11 (Precursor)
trEMBL	tr\|G7K7J2\|G7K7J2_MEDTR	0	Glycosyl hydrolase family 9 protein {ECO:0000313\|EMBL:AES99876.1}

Sequence

Transcript Sequence

>Glyur000259s00016749.1
ATGGAGGAAAACAGACAACAACATAAGAAACAACACCATTTTGGAGCTTCCAAAATCCCCATATTCTTGCAGCATTGTTGTCTTTGCTTCTTCATCTTCACCATCTTCACTACTACTACCACCACCACTACCATCCAAGCTTTTGATTATGCTGATGCCCTTTCAAAGAGCCTCCTCTACTTTGAAGCACAGCGTTCTGGGAGGATACCTTACAACCAGCGTGTCACTTGGCGTGACCATTCTGGCCTCACCGATGGCCTAGAACAAGGGGTGGATTTGGTTGGAGGGTATTACGATGCAGGTGATCATGTGAAGTTTGGTTTACCAATGGCATTCACTGTGACAATGCTCTCATGGGGTGCCATTGAATATTGGCAAGAAATTGCAGATGCAGGTGAATTGGAACACACAATGGAAGCAATCAAATGGGGCACTGATTACTTCATCAAAGCTCACACTAGCCCAAATGTGGGTGATGGTGACACTGACCATTATTGTTGGCAACGCCCAGAGGACATGACAACCTCAAGGAGAGCATTCAAGATAGATGAGAACAACCCTGGTTCAGATCTGGCTGGAGAAACAGCAGCAGCTATGGCAGCTGCATCCATAGTGTTCAAGAAAACAAACCCACATTACTCTCACTTACTTTTACACCATGCTCAGCAGTTGTTTGAGTTTGGAGACAAGTATAGAGGAAACTATGATGCTAGTGTTGGAGTAGTGAAGAACTACTATGCGTCGGTGAGTGGATACATGGATGAGCTGTTGTGGGCTGCCACGTGGCTGTACAAGGCCACCGACAAGGAAGAGTATTTTGAGTACATNATTTCCAAGGCTCATATCTTTGGTGGCACTGGTTGGTCCATATCAGAGTTCAGCTGGGACGTCAAGTATGCTGGCCTCCAAGTCATTGCCTCTAAGTTTCTAAACGAAGCAAAACACAAGAAGCATGGTGATACACTTGAACAATATAGATCAAAAGCAGAGTACTATATATGCTCATGTCTCAACAAAAACATCAATGGCAGCAATGTGGAAAGAACCCCAGCAGGGTTACTGTATATCCGACAGTGGAACAACATGCAGTACGTTTCAACAGCAGCATTTTTACTCACAGTGTACTCTGACTTTCTCAAAATCACAAACCAAAAGCTAAGATGCCATGGGGGCACTGTGGATCATGAAGAAATTCTCAGTTTTGCTAAATCACAAGTTGATTACATTTTGGGCCATAACCCAATGAACATGAGCTACTTAGTGGGCTATGGNCCNAGCTACCCAAAAAGGGTGCANCATAGAGGTGCATCCATAGTGTCATACAAGGAGAATAAAGGGTTCATAGGGTGTACTCAAGGGTATGATAATTGGTATAGTAACCAGGCACCTAATCCAAACGTTTTGGTTGGAGCTTTGGTTGGAGGGCCAGATTGGCAAGACAATTTTGAGGATCAAAGGAGCAACTATATGCAGACTGANGCATGNACATACAANACTTCCCCCTTAGTTGGTGTTTTTGCAAAGTTCTTGCGTATAGAGAACCAAAAGATGGTTCATGATTGTAATTCACTTTTGGTTGCTTCCTTTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00259	128322	133167	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH9

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000259s00016749.1	PF00759.14	Glyco_hydro_9	49	507	4.20E-156

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.395
SRR1783600	control	0.414
SRR1783602	moderate drought stress	0.519
SRR1811619	moderate drought stress	0.445

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.803
DRR006520	Root Summer glycyrrhizin high producing strain	1.751
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.959
DRR006524	Root Summer glycyrrhizin low producing strain	0.961
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.361
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.772

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.468
SRR2868004	Drought Stress (root)	0.721
SRR2967015	Control (root)	0.414

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.310
SRR9715740	Leaf	0.100
SRR9715741	Leaf	0.122
SRR9715739	Root	0.103
SRR9715742	Root	0.369
SRR9715743	Root	0.302

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.334
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.247
SRR8400027	Control - Root	1.128