Gene detail

Gene detail information of Glyur000259s00016746.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G35710.1	0	Protein kinase family protein with leucine-rich repeat domain
NR	XP_003616915.1	0	DNA-directed RNA polymerase subunit beta [Medicago truncatula]
COG	YP_004775215.1	2.00E-60	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q8VZG8\|Y4885_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At4g08850 (Precursor)
trEMBL	tr\|G7K7I9\|G7K7I9_MEDTR	0	LRR receptor-like kinase family protein {ECO:0000313\|EMBL:AES99873.2}

Sequence

Transcript Sequence

>Glyur000259s00016746.1
ATGAGTTTAGCAGAAGCACCCCACACCTCAAACATAATGTCCAGAAAGTTTCTGTCATTTCGGTTGATTCTCATTACTTTTTTCTGCTCACTTTTAAGGCTCTCTGCCTTCCAACTTTCCAGCATTTTCACTACTGCTGCTACAGTTGGTACTTATGAAGCTGCAGAAAATCATCATGAAGACAGTGAAGTCAGTGCTCTGTTAAAGTGGAAAGCCAACCTTGACAACCAAAGCCAAGCTTCCTTGTCTTCTTGGACCACTAGTGCTACCAGTCCTTGCAACTGGCAAGGAATTGTTTGTGATGAAACCAAGTCTATGGTGAGAACAATAAATGTTGCAAACTTTGGACTAAAAGGTACTCTTTTCGGTCTCAACTTCTCATCCTTTCCTATGCTGCTCACCCTGGATGTAAGTAACAACTCATTTTATGGAACCATTCCCCAGCAAATTGGTAACTTGTCAAGCAGAATTTCTCAACTAAAAATGGGTTATAACCTTTTCAGTGGTTCCATCCCCCAAGAAATTGGGGCACTGAGAAATCTAAGTCAGCTTCATATTGCAANGTGTAAGCTCACTGGGCCAATCCCTCTTTCCATGATGGAGTTGGCNAAATTGTCATTTCTAGATTTAGCTGGCAACCAACTTTCTGGCTATATTCCTCAAGAGATTGGGGGATTGANGAACCTGAAGTTTCTGTCTTTTAAAGCAAATAGACTTTCTGGTTCCATTCCCCCAACAATTGAAATGTTGACAAATCTTGTTACACTTGATTTGTCAGCCAACTCTCTTTCTGGTGCAATCCCTTCAATTAGAAGCTTGAGGAATCTAGAACGACTTGTCCTCTATGGAAACCGTTTATTATCTGGGCCTATTCCTGAGGAGTTGGGAAGACTCTCTTCTCTAACAACAATCAAATTGTTGCGCAATAATCTGTCTGGGCCAATCCCATCTTCCATTGGAGACTTNGCCAATTTGACCACACTTCAGCTCAGTGAAAATAAACTTTATGGATCAATTCCTCCCACTCTTGGAAACTTGACAAAACTCATCCAATTGTCCCTTTCTGGAAATAAACTTTTTGGANCAATTCCTGCTTCCATTGGAAACTTGGTCAATCTAGAGAAGCTTAGCCTTTCACAAAACTATCTTTCTGGACCTATTCCTTCTACCTTTGGAAATTTGACCAAGCTCAGCTATGTATTACTCTATAACAACCACCTTAATGGTAGTTTTCCCCCAGCAATGAATAACCTCACCAATTTGCAAAGCTTACAGCTAAGTGCAAATGATTTCACTGGCCCTTTGCCGCAACAGATTTGCCTTGGTGGATCACTTGCAAACTTTTCTGCTGACAGGAATCATTTCACTGGCCCAGTTCCTAGAAGCTTGAAGAATTGCTCCAGCCTTTTAAGACTCAACCTTGCAGAAAACATGTTGGTTGGAAATATTTCGGATGATTTCGGTGTATATCCAGATTTGAGCATCATTGATCTGAGNCACAATTATTTTTATGGCCACCTTTTGCCAAATTGGGCAAAAAGCCATAATCTCCTTGGCCTAAAGATCAACAACAATAAGTTATCTGGAAATATACCACCAGAACTAGGACAANCACCAAAGTTACAATCACTTAAACTGTCTTCAAATCATCTTACAGGGAAAATTCCTAAAGAACTATGTAACTTGACCTCATTGTATGACCTCTCCCTAAGTAACAATGAGCTTTCAGGCAACATTCCCATAGAAATAGGATCCATGCAGAGCCTTAAATACTTGTATCTTGCAGCAAATAACTTAAGTGGCTCAATCCCAAAACAGGTTGGAGATCTGCACATTTTAGTTCGGTTGAATTTGAGCAACAATAAGTTCAAGGGAGACATTCNCTCTGAATTTAACCAATTGCAATCCCTTGAAAGTCTTGATCTTGGTGGGAATTTGTTGAATGGACAAATACCAGCATGCCTTGGGAAGTTGCAAATGTTGAACACATTGAACCTCTCACACAACAATCTCTTTGGGACCATTCCATCTAGTTTTGAGGACATGCTCAGCTTGACAAATGTTGACATATCTGAAAACCAATTAGAGGGTCCAATTCCTAACAATCCAGCCTTTCTTAANGCTCCCTTTGAAGCACTGAGAAACAATAAAGGCTTGTGTGGCAATGCATCCAGATTGGTGCCTTGCCGAGAGTTGTGTCCCATTCAAAAGAAAACAAATGTGGTGATGTTGGCACTATTCCCTACTTTGGGTGTTCTTTTGCTGTTAGTGTTCTTGTTTGGAGCTTTGTTATGTGTTCATTGGCAAAGGGCAAGGAAAATCCAAAAGCAGGCTAGGGAAGAACAAACTCAAGACCTTTTCTCCATATGGAGTTATGATGGGAAAATGGTTTATGAAAATATCATTGAAGCCACAGAGGAGTTTGATGACAAATATCTCATTGGAGAAGGAGGGTCTGGAGCTGTTTACAAAGCAAGCTTACCCTCTAGCCAGGTTGTTGCTGTNAAGAAGCTTCATGCTGAAGTGGACAGTGAAATGCTCAATTTCAAGGCTTTCACCAATGAGGTTCGAGCCTTGACAGAAATCAAACATCGAAACATTGTGAAGTTGTATGGATTTTGTTCACACCCACGCCACTCTTTTCTGGTCTATGAGTTCCTAGAAGGNGGCAGCTTGGATAATGTGCTAAACAGTGATACACAGGCAGTGATGTTTGATTGGAAGAAGAGGGTGAATGTTGTTAAGGGTGTNACAAATGCTCTTTACCACATGCATCACGGTTGCTCTCCTCCTATTGTNCATCGTGACATATCAAGCAAGAATGTTCTTCTGGATTTGGAATATGAAGCNCGCATCTCAGACTTTGGAACAGCTAAGATTCTGAATCTTGATTCACACAATTGCTCCACGTTTGCAGGCACTTACGGATATGCAGCACCAGAGCTTGCTTATACTATGGAAGTGAATGAGAAATGTGATGTCTTCAGTTTTGGAGTGCTTTCCTTGGAAATAATAATGGGAAAGCATCCTGGGGATCTTATTTCTACACTGTTTTCATCGTCTGAAGCACCAANAGCATATGGTTTGCTACTGAAGGATGTGCTGGACCAAAGACTTCCTCTTCCAGTGAATTCAGCNGCTAAGGAATTGGTCTTGATTGCAAAAATGGCATTTGCTTGCTTGAGTGAAAATCCACGTTCCCGTCCAAATATGGAAGAAGTGTATAACATGTTTGTGATGTCAAAATCACCTTTGAGGGAGACATTTAGGATCATCACACTTGGTCAACTTCTAAACTAG

Protein Sequence

>Glyur000259s00016746.1
MSLAEAPHTSNIMSRKFLSFRLILITFFCSLLRLSAFQLSSIFTTAATVGTYEAAENHHEDSEVSALLKWKANLDNQSQASLSSWTTSATSPCNWQGIVCDETKSMVRTINVANFGLKGTLFGLNFSSFPMLLTLDVSNNSFYGTIPQQIGNLSSRISQLKMGYNLFSGSIPQEIGALRNLSQLHIAXCKLTGPIPLSMMELAKLSFLDLAGNQLSGYIPQEIGGLXNLKFLSFKANRLSGSIPPTIEMLTNLVTLDLSANSLSGAIPSIRSLRNLERLVLYGNRLLSGPIPEELGRLSSLTTIKLLRNNLSGPIPSSIGDXANLTTLQLSENKLYGSIPPTLGNLTKLIQLSLSGNKLFGXIPASIGNLVNLEKLSLSQNYLSGPIPSTFGNLTKLSYVLLYNNHLNGSFPPAMNNLTNLQSLQLSANDFTGPLPQQICLGGSLANFSADRNHFTGPVPRSLKNCSSLLRLNLAENMLVGNISDDFGVYPDLSIIDLXHNYFYGHLLPNWAKSHNLLGLKINNNKLSGNIPPELGQXPKLQSLKLSSNHLTGKIPKELCNLTSLYDLSLSNNELSGNIPIEIGSMQSLKYLYLAANNLSGSIPKQVGDLHILVRLNLSNNKFKGDIXSEFNQLQSLESLDLGGNLLNGQIPACLGKLQMLNTLNLSHNNLFGTIPSSFEDMLSLTNVDISENQLEGPIPNNPAFLXAPFEALRNNKGLCGNASRLVPCRELCPIQKKTNVVMLALFPTLGVLLLLVFLFGALLCVHWQRARKIQKQAREEQTQDLFSIWSYDGKMVYENIIEATEEFDDKYLIGEGGSGAVYKASLPSSQVVAVKKLHAEVDSEMLNFKAFTNEVRALTEIKHRNIVKLYGFCSHPRHSFLVYEFLEGGSLDNVLNSDTQAVMFDWKKRVNVVKGVTNALYHMHHGCSPPIVHRDISSKNVLLDLEYEARISDFGTAKILNLDSHNCSTFAGTYGYAAPELAYTMEVNEKCDVFSFGVLSLEIIMGKHPGDLISTLFSSSEAPXAYGLLLKDVLDQRLPLPVNSAAKELVLIAKMAFACLSENPRSRPNMEEVYNMFVMSKSPLRETFRIITLGQLLN

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00259	112569	116117	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000259s00016746.1	PF08263.7	LRRNT_2	61	101	4.10E-09
Glyur000259s00016746.1	PF00560.28	LRR_1	204	226	0.78
Glyur000259s00016746.1	PF13855.1	LRR_8	228	286	1.40E-06
Glyur000259s00016746.1	PF13855.1	LRR_8	324	383	1.70E-07
Glyur000259s00016746.1	PF13516.1	LRR_6	418	440	2
Glyur000259s00016746.1	PF00560.28	LRR_1	540	562	0.086
Glyur000259s00016746.1	PF13855.1	LRR_8	636	695	2.70E-07
Glyur000259s00016746.1	PF00069.20	Pkinase	813	1077	2.20E-45

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.254
SRR1783600	control	1.253
SRR1783602	moderate drought stress	0.513
SRR1811619	moderate drought stress	0.464

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.033
DRR006520	Root Summer glycyrrhizin high producing strain	0.032
DRR006521	Root Winter glycyrrhizin high producing strain	0.140
DRR006522	Root Winter glycyrrhizin high producing strain	0.198
DRR006523	Root Summer glycyrrhizin low producing strain	0.033
DRR006524	Root Summer glycyrrhizin low producing strain	0.033
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.394
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.393

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.064
SRR2868004	Drought Stress (root)	0.114
SRR2967015	Control (root)	0.098

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.069
SRR9715740	Leaf	0.029
SRR9715741	Leaf	0.042
SRR9715739	Root	0.120
SRR9715742	Root	0.496
SRR9715743	Root	0.470

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.018
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.017

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.438
SRR8400027	Control - Root	2.732