Gene detail information of Glyur000259s00016742.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G05790.1 | 0 | O-Glycosyl hydrolases family 17 protein |
| NR | XP_006595830.1 | 0 | PREDICTED: glucan endo-1,3-beta-glucosidase 12-like [Glycine max] |
| Swissprot | tr|Q9ZU91|E133_ARATH | 6.00E-126 | Glucan endo-1,3-beta-glucosidase 3 (Precursor) |
| trEMBL | tr|I1M7H2|I1M7H2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G05300.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00259 | 88747 | 91187 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH17,CBM43 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000259s00016742.1 | PF00332.13 | Glyco_hydro_17 | 9 | 326 | 2.50E-103 |
| Glyur000259s00016742.1 | PF07983.8 | X8 | 373 | 444 | 2.00E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 69.772 |
| SRR1783600 | control | 69.484 |
| SRR1783602 | moderate drought stress | 36.108 |
| SRR1811619 | moderate drought stress | 36.120 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 43.558 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 42.783 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 31.307 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 31.067 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 151.099 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 149.873 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 71.290 |
| SRR2868004 | Drought Stress (root) | 33.105 |
| SRR2967015 | Control (root) | 44.748 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 112.104 |
| SRR9715740 | Leaf | 66.542 |
| SRR9715741 | Leaf | 76.832 |
| SRR9715739 | Root | 52.531 |
| SRR9715742 | Root | 29.046 |
| SRR9715743 | Root | 31.027 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 31.004 |
| SRR8749028 | MeJA induced 9h | 6.042 |
| SRR8749029 | MeJA induced 9h | 9.409 |
| SRR8749030 | Uninduced | 0.380 |
| SRR8749031 | Uninduced | 0.361 |
| SRR8749032 | Uninduced | 0.815 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 74.369 |
| SRR8400027 | Control - Root | 71.497 |