Gene detail

Gene detail information of Glyur000258s00015282

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G15330.1	2.00E-92	SPX domain gene 4
NR	XP_003629411.1	0	SPX-domain protein [Medicago truncatula]
Swissprot	tr\|Q94A21\|SPX4_ARATH	2.00E-126	SPX domain-containing protein 4
trEMBL	tr\|G7LDX2\|G7LDX2_MEDTR	0	SPX domain protein {ECO:0000313\|EMBL:AET03887.1}

Sequence

Transcript Sequence

>Glyur000258s00015282.1
ATTTTTATCAAAAAAAAAAAAATCTACTTTCCAAAATAATACAGCATTCCTAGATTCCTTCGAATCTTGCACACACACACAAACACAAACACTCTCCCTATGCAAATAAGCAAAGCCAAATCCAATAATTGAGCTTTCAACCTTGATCTGATCGTAACAATCATTACAAGTTACAACCCAATAATCAGAATTAGCAACCAACAATGAAGTTTGGGAAGGAATTCAAGACCCATCTAGAAGAAACCATCCCTGAGTGGAGGGACAAGTTCCTCTGCTACAAGCCATTGAAGAAGCTCCTCAAGCACCACCCACTCACACCTTCCACNACCACCACCACCACAACCACCACCACCATACCCATCAATCTCCACCTTCACCTTCTTCAACAACCCCACCTCCTCCACGCTTGGTTCCTTCGGATTCTCAACCAAGAGCTTGAAAAGTTCAATGATTTCTACGTTGATAAAGAGGAAGACTTTGTTATCCGCTTCCAGGAGCTGAAAGAGCGAATTGAGCGTCTCAATGAAAAAAGCAGCCAGAGTGAAGAGTACACTTCTGATTGTGAATTTAGTGAAGAAATGATGGAAATCAGGAAGGACTTGGTCACAATCCATGGAGAGATGGTGCTCCTAAAAAACTACAGTTCCTTAAACTTTGCTGGACTAATTAAGATTTTGAAGAAGTATGATAAAAGAACCGGCGGGTTGTTGCGTCTGCCTTTTACACAACTTGTTCTTCGACAACCTTTTTCCACTACTGAGCCTCTAACGAGGCTCGTTCATGAATGCGAGGAAAATCTTGAACTACTCTTTCCCCTACAAGAAGAAGTAATTCAATCTACTCCCCATCCAGAACACGAGTCTAGACCACNGGTAGATAACACAGCAAATGTCGTACCTGAGGCATCCTCAAATCTTGGGAAGGAAACTGTGTATCTATATCGTAGCACTCTTGCAGCTATGAGAGCCATAANGGGTCTTCAGAAAGGGAGCTCCACCTGCAATGAATTTTCCTTTTCTTCCCTCTTTAGCAACCAAGATGATGATGGCACCGGTGCTGTAACCGCTGAAAACTCTGCAGCAAATTCCCCAGCTACCTTGCAGAATGAGGAAGACAATGGTAAAGAGGATATTGATTCTGTGTAGTTTACCGCCTTTTCTTTTCAGGGTTGATTCCACTCTATCTTCTTTTGGATTGTTGTTTTCAGCCTTGTTAGTTGAAACTAAATGAAGTGGTATCTCTTTGTCCCTATAAACAATAAAATTACACACAANTAATGAGATTGAGATGTGCTTTCTTTAGCATCTAACTTGGAAAATAATACACAGACACTGCTTTTTTTTTTTTTTTTCTTCCCCTTTTCACTTCTATGCCTTTCTAGTTTCTATGCTTCCTTGTTACACTTGCTGTTGTGCCTACTTTCTTTTTACCTTCCACTTTTACGTGTCACTTGTCAATGCTTCCTTGTAACACCTGGTATTTTTTATGCTGATTAAGTTTTAAATGTAAGGTGTTACTATCAAGCATAGTTTGCATCAGTGATTGGCATCNCATGGAGTAGAATACTTTAAACTATTGCTTGACAGTGTCATTAGATTANGTTTTAAAATTATGGGAGATCTGAATTGTAGTATGGAATAAAACAATTGTAATGGTCATCATGTCAAAGATGCATGGGTGAAAAATAGGTGCTGAACATAACTCCACATTTTCACCCAAAACTTTAAAGTATTATGTGTATGAGTCTGTTTTTTTATATTGTCGCAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00258	220620	224746	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000258s00015282.1	PF03105.14	SPX	1	175	1.80E-32

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	61.242
SRR1783600	control	62.090
SRR1783602	moderate drought stress	70.890
SRR1811619	moderate drought stress	78.356

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	53.424
DRR006520	Root Summer glycyrrhizin high producing strain	52.346
DRR006521	Root Winter glycyrrhizin high producing strain	49.992
DRR006522	Root Winter glycyrrhizin high producing strain	48.592
DRR006523	Root Summer glycyrrhizin low producing strain	38.715
DRR006524	Root Summer glycyrrhizin low producing strain	39.207
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.182
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.884

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	41.799
SRR2868004	Drought Stress (root)	51.194
SRR2967015	Control (root)	42.716

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.653
SRR9715740	Leaf	7.040
SRR9715741	Leaf	8.268
SRR9715739	Root	30.509
SRR9715742	Root	43.083
SRR9715743	Root	39.218

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.137
SRR8749028	MeJA induced 9h	12.941
SRR8749029	MeJA induced 9h	9.611
SRR8749030	Uninduced	15.113
SRR8749031	Uninduced	8.807
SRR8749032	Uninduced	6.483

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	74.201
SRR8400027	Control - Root	73.290