Gene detail

Gene detail information of Glyur000258s00015275

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G15340.1	Pentatricopeptide repeat (PPR) superfamily protein
NR	XP_004489421.1	PREDICTED: pentatricopeptide repeat-containing protein At5g15340, mitochondrial-like [Cicer arietinum]
Swissprot	tr\|Q9LXE8\|PP386_ARATH	Pentatricopeptide repeat-containing protein At5g15340, mitochondrial (Precursor)
trEMBL	tr\|G7KKZ3\|G7KKZ3_MEDTR	Pentatricopeptide (PPR) repeat protein {ECO:0000313\|EMBL:AES74764.1}

Sequence

Transcript Sequence

>Glyur000258s00015275.1
ATGAGATGGTCACGGTCACAGACAACAATTACTCTTACTCNATACCGTTGTGCTTCCTCATCATCCTCACTCGCTCTCCGCTTCCGCTCTCTTCTCCGACAATGCGCACGCGCCACCGCTCTCCGCCCCGGCAAGCAACTCCACGCCGCCGCCACCGTCACCGGCCTCCTCTCTTCCCCAAACCTCTTCCTCCGCAACGCCCTCCTCCACCTCTACGCCNCCTGCTCCCTCCCTTCCCACGCGCGCAAACTGTTCGACGAAATTCCCCACTCGCACAAAGACTCCGTAGACTACACCGCCCTCATCCGTCGCTGTTCCCCACTCGAATCCCTCCAACTGTTTCTCCAAATGCGCCAACAAGGCCTTCCCCTTGATGGGGTCGCCATGGTTTGCGCCCTCAACGCGTGTGCAAGACTCGGGGACCCGCGCGTGGGGACCCAAATGCACGTGGGTGTGGTAAAGTTCGGGTTTTTGAAGTACACCAAGGTGTGCAACGCGGTGATGAATGTGTATGTCAAGTTTGGGCTTGTGGGTGAGGCTAGAAAGGTGTTTGAAGAGATTGAGGTTCCTAGTGTTGTGTCTTGGACTGTGGTTTTGGAAGGTGTTGTGAAATGGGAAGGTGTGGAGAGTGGGAGGGTGGTGTTTGATGGAATGCCTGAGAGGAATGAGGTTGCTTGGACTATTATGATAGTGGGTTATGTTGGGAATGGTTTTACAAAGGAGGCTTTTTGGCTTTTGAAAGAAATGGTTTTTGGTTGTGGTTTTGGGTTGAATTATGTCACACTGTGTTCGGTTTTGTCAGCTTGTTCTCAGTCTGGTGATGTGTTTTTGGGTAGGTGGGTTCATGGTTATGCTGTTAAGGCAATGGGGTGGGACTTGGGTGGTGTTATGGTTGGGACTAGTTTGGTTGACATGTATGCAAAATGTGGGAGGATAAGTGCTGCATTGTTGGTGTTTAGGCACATGTTGAAGAGGAATGTGGTGGCTTGGAATGCCATGCTTGGTGGGTTGGCCATGCATGGGATGGGGAAAGTTGTGGTGGAAATGTTTCCTTGCATGGTGGAAAAAGAAAAAGTGAGACCTGATGGTGTGACTTTTATGGCTTTGTTAAGTGCATGCAGCCATTCAGGTCTAGTTGAAAAGGGTTGGCAGTACTTTCATGATCTTGACTCTGTTTATGGGATAAAGCCAGAGATAGAGCATTATGCTTGCATGGTGGACCTTCTTGGTCGATCTGGGCGTTTGGATGAAGCTGTGATTCTGGTTAAGGATATGCCAATTCCACCAAATGAGGTTGTTTTGGGGTCCCTTCTTGGTTCTTGTTATGCACGTGGTAAGTTGCAGCTTGGGGAACGGATTATGAGAGAGTTGGTTGAGATGGATCCCCTCAACACTGAGTATCACATCCTGCTTTCGAACATGTATGCATTGTATGGAAAATTAGACAAGGCAAATTCCCTTAGGAATGTTCTCAAGAAAAGGGGTATCAGAAAAGTGCCAGGAATGAGCTCCATATATGTTGGTGGCCAACTTCATCAGTTCAGTGCAGGTGATAAGTCACACCCACAAGCTTCAGAGATTTACANGAAGCTAGATGACATGATTTGCAAGTTGAGGTTTGGTGGCTATGTTCCAAATACAAGTTGTCAAGTTTTGTTTGGTGGTTGTGATGAAGCATTGGAGGAGGTAGAACAGGTGTTGTTCACTCATAGTGAGAAGCTGGCACTGTGTTTTGGCCTAATGAGCACAGTTTCTGGTTCTCCACTATACATTTTCAAGAACCTGAGGATATGCCAAGACTGTCATTCTGCTATTAAGGTTGCCTCTGATGTATACCAACGTGAAATTGTTAGATTCTTTCTCCCCGTGGGGAAGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00258	193428	195666	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000258s00015275.1	PF01535.15	PPR	164	187	0.0023
Glyur000258s00015275.1	PF01535.15	PPR	224	250	3.90E-05
Glyur000258s00015275.1	PF13812.1	PPR_3	300	328	0.00064
Glyur000258s00015275.1	PF01535.15	PPR	364	388	0.073
Glyur000258s00015275.1	PF01535.15	PPR	402	425	0.081
Glyur000258s00015275.1	PF14432.1	DYW_deaminase	562	617	2.50E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.796
SRR1783600	control	0.973
SRR1783602	moderate drought stress	1.374
SRR1811619	moderate drought stress	1.242

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.961
DRR006520	Root Summer glycyrrhizin high producing strain	1.826
DRR006521	Root Winter glycyrrhizin high producing strain	0.292
DRR006522	Root Winter glycyrrhizin high producing strain	0.290
DRR006523	Root Summer glycyrrhizin low producing strain	1.998
DRR006524	Root Summer glycyrrhizin low producing strain	1.943
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.987
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.986

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.996
SRR2868004	Drought Stress (root)	2.042
SRR2967015	Control (root)	2.292

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.560
SRR9715740	Leaf	0.728
SRR9715741	Leaf	0.381
SRR9715739	Root	1.998
SRR9715742	Root	1.908
SRR9715743	Root	1.991

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.865
SRR8749028	MeJA induced 9h	1.040
SRR8749029	MeJA induced 9h	0.874
SRR8749030	Uninduced	0.248
SRR8749031	Uninduced	0.024
SRR8749032	Uninduced	0.231

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.222
SRR8400027	Control - Root	3.579