Gene detail

Gene detail information of Glyur000258s00015273

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G01100.1	hypothetical protein 1
NR	XP_004489423.1	PREDICTED: uncharacterized membrane protein YLR241W-like [Cicer arietinum]
Swissprot	tr\|Q8GUH7\|CSCLC_ARATH	CSC1-like protein HYP1
trEMBL	tr\|G7KLA3\|G7KLA3_MEDTR	ERD (Early-responsive to dehydration stress) family protein {ECO:0000313\|EMBL:AES74766.2}

Sequence

Transcript Sequence

>Glyur000258s00015273.1
CTCACTTGCTTCTCTTTTGCTCCATAATCATCATAACCATAACCAGGTTCGGCAATTAACGTTTAATATCTATTCAGGCCTACAGTTGTGTTGTCGGTAGTAAAGAGCCAATCTGGTGGTTTTGAACCAGATTTCAATAATGATCCTTTCTGCTCTTTTAACTTCTGTTGCAATTAACCTTGGTCTCTGTTTTCTATTTTTCACCCTGTACTCTATATTGAGAAAACAGCCTGGTAATATCACTGTCTATGCACCACGCTTAGTTGCTGAAGGAAAAGTTAAAGAGGGTGGTCAATTTAACTTGGAACGGTTATTACCTACTGCTGGTTGGGTGAGAAAGGCATGGGAGCCTTCCGAGGATGAGTTTTTATCAAATTCAGGCTTAGATGCTTTTGTCTTCATGCGCATGTTTATCTTTAGTTTAAAAGTATTTACTTTTGGTGGAATTATTGGGATGTTCGTTCTTCTTCCGATTAATTATATGGGGAGTCAGCTTAGTGATGATTCAGATTTTCAACACAAGTCTTTGGACTCATTCAGTATTTCTAATGTTAACAACGGCTCAAACAGGTTATGGATCCATTTTTCCGCTGCATATGTTTTCACTGGAGTTGTTTGCTATCTTCTTTATTATGAGTACTGGTACATTTCATCGAAAAGAATATCTTGCTTTTATTCATCCAAGCCTCAGCCTCATCAGTTTACGTTATTAGTCCGTGGTGTTCCTATTGCACCTGGAAGCACATGTAGTGATGCTGTTGAGCGTTTTTTCTTAGAGTATCACCCTTCTACATATCTTTCACATTCAGTGGTCCGTCGAAACAGCAAACTTCAAAGTCTTATTACCGATGCAGATAAACTGTATAAAAGGCTTACCCATCTGAAACATAAAAATGAAAGGCACAGGCGTGAAGGGTTTTTGGGACTTTTTGGGCGTAAAGTTGATAGTTTAGATCACTATGAAAGGCGACTGGGAAATATAGAAGATAATTTGAGAATGGAACATTCCTCAGTGGCATCAAAGGTTGTTATGACGATGGTGTCTAATACATCTACTTGTTCTGTAATCAATTGCAACTTAAAGGAAGTTCCTGCTGCCTTCGTCTCATTTAAGACACGATTCGGTGCTGCAGTAGCCGTGCACATTCAAGAAGGTGTCAATCCCACAGAATGGGTTACTGAACAAGCTCCTGAGCCTCATGATGTTTATTGGCCTTTCTTTAGTGTTTCATTCTTTAAAAGATGGATCAGCAAGCTGGTGGTTTTTGTTGCATGTACTACTCTTACAATTCTATTTTTAATCCCAGTTGCAATAGTACAAGGTCTTACCCATCTTGATCAGTTGGAAACGTGGTTCCCTTTTTTGAAAGGCATACTAAGACTGTCAGTTGTGAGCCAAGTTATAACAGGATACCTTCCCAGTTTGATTCTTCAGTTGTTTCTATCCTTTATTCCACCTATTATGATTATGCTTTCATCCTTGCAAGGATACATTTCATGGAGTAGGATACAAAAAAGTGCGTGTACTAAAGTATTATTGTTTACTATATGGAACATTTTCTTTGCAAATGTACTATCTGGATCAGCTCTCTATCGAGTGAATGTCTTTCTTGAGCCCAAAGAGATTCCCAGAGCATCATTCTTCATAGCATATGTTGTGACAACCGGGTGGACCACAATAGCATCAGAACTCTTTCAATTGACTACACTTCTTTACAATTTTATAAAAAGAATTTTTTGTAGAAATGGAGATGATGATTTTGAGCCCCCATCAATTCCTTATCACAGTGAAATCCCCAGGATTCGTCTCTTTGGTCTTCTTGGTGTAACATATTTCATTCTTGCTCCACTGATACTGCCATTTCTCTTGATATATTTCTGTTTGGGATACATCATTTTCCGCAACCAGTTTTTGAAAGTTTATGTGCCAAAGTTTGAGACTGAAGGAGAGTTTTGGCCTACAGTGCACAACTCCACAATATTTTCATTGGTACTGATGCATGTAATATCCATTGGGATTTTTGGTTTGAAAAAGCTTCCTCTGGCATCAGGATTGACTCTTCCTCTTCCAATTCTCACACTTCTATTCAATGAGTATTGCCAGAAACGGTTCCTCCCTATATTCATGGATTATCCAGCTGAGTGTTTGATTAAGAAGGACAGAGCAGACCAAAATGAGCATAATATGTCTGAATTTTATGATAAGTTGGCCAGTGCATATAATGATCCAGCTCTTATGCCAAGCAAATATTCAGAAAGGTCTGATAGTCACACTTCTCCACTGCTTCATAGTTCTGAAGTTTAGTTCCTAACTATGTTCTTATGGGGTTTGGTTGTAACTATGAAAAGGCAATGTGCCTTCAATTTGACTTCCTCTTAGATTTTTTTTTTCCGATTGTTCTTGGTATATATAGCATGCCCCTTGTGTTCTTGTAAATTGTTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00258	177705	184755	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000258s00015273.1	PF13967.1	RSN1_TM	5	166	2.30E-44
Glyur000258s00015273.1	PF14703.1	DUF4463	224	281	1.30E-06
Glyur000258s00015273.1	PF02714.10	DUF221	320	628	1.50E-79

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.716
SRR1783600	control	14.679
SRR1783602	moderate drought stress	14.140
SRR1811619	moderate drought stress	14.370

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.553
DRR006520	Root Summer glycyrrhizin high producing strain	16.142
DRR006521	Root Winter glycyrrhizin high producing strain	23.863
DRR006522	Root Winter glycyrrhizin high producing strain	23.359
DRR006523	Root Summer glycyrrhizin low producing strain	20.624
DRR006524	Root Summer glycyrrhizin low producing strain	20.190
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.041
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.716

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.663
SRR2868004	Drought Stress (root)	16.213
SRR2967015	Control (root)	14.754

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.710
SRR9715740	Leaf	14.740
SRR9715741	Leaf	11.529
SRR9715739	Root	4.501
SRR9715742	Root	18.976
SRR9715743	Root	16.283

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.436
SRR8749028	MeJA induced 9h	10.337
SRR8749029	MeJA induced 9h	3.461
SRR8749030	Uninduced	4.255
SRR8749031	Uninduced	1.302
SRR8749032	Uninduced	1.785

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	34.359
SRR8400027	Control - Root	29.850