Gene detail information of Glyur000258s00015265 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G52530.1 | 7.00E-126 | |
| NR | XP_007023278.1 | 6.96E-178 | F6D8.25 [Theobroma cacao] |
| trEMBL | tr|A0A061G7Q5|A0A061G7Q5_THECC | 3.00E-178 | F6D8.25 {ECO:0000313|EMBL:EOY25900.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00258 | 123549 | 125396 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000258s00015265.1 | PF04005.7 | Hus1 | 1 | 281 | 2.70E-53 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.913 |
| SRR1783600 | control | 7.161 |
| SRR1783602 | moderate drought stress | 7.110 |
| SRR1811619 | moderate drought stress | 7.430 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.388 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.375 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.397 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.271 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.856 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.967 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.883 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.964 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.433 |
| SRR2868004 | Drought Stress (root) | 4.147 |
| SRR2967015 | Control (root) | 5.847 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.352 |
| SRR9715740 | Leaf | 0.579 |
| SRR9715741 | Leaf | 2.679 |
| SRR9715739 | Root | 2.743 |
| SRR9715742 | Root | 4.495 |
| SRR9715743 | Root | 4.938 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.915 |
| SRR8749028 | MeJA induced 9h | 0.639 |
| SRR8749029 | MeJA induced 9h | 0.503 |
| SRR8749030 | Uninduced | 0.070 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.733 |
| SRR8400027 | Control - Root | 7.442 |