Gene detail information of Glyur000258s00015264 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G15350.1 | 1.00E-37 | early nodulin-like protein 17 |
| NR | XP_004489434.1 | 4.91E-76 | PREDICTED: lamin-like protein-like [Cicer arietinum] |
| Swissprot | tr|Q39131|LAML_ARATH | 7.00E-46 | Lamin-like protein (Precursor) |
| trEMBL | tr|Q2HW94|Q2HW94_MEDTR | 1.00E-71 | Uncharacterized protein {ECO:0000313|EMBL:AFK37604.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00258 | 117682 | 122870 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000258s00015264.1 | PF02298.12 | Cu_bind_like | 111 | 162 | 1.30E-07 |
| Glyur000258s00015264.1 | PF02298.12 | Cu_bind_like | 236 | 318 | 5.00E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 22.568 |
| SRR1783600 | control | 22.471 |
| SRR1783602 | moderate drought stress | 5.872 |
| SRR1811619 | moderate drought stress | 5.674 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 22.086 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 22.409 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.094 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.091 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.256 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.247 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.866 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.776 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 86.808 |
| SRR2868004 | Drought Stress (root) | 35.123 |
| SRR2967015 | Control (root) | 32.656 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.495 |
| SRR9715740 | Leaf | 0.176 |
| SRR9715741 | Leaf | 0.790 |
| SRR9715739 | Root | 12.835 |
| SRR9715742 | Root | 7.594 |
| SRR9715743 | Root | 10.516 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.477 |
| SRR8749028 | MeJA induced 9h | 2.651 |
| SRR8749029 | MeJA induced 9h | 1.378 |
| SRR8749030 | Uninduced | 1.000 |
| SRR8749031 | Uninduced | 0.131 |
| SRR8749032 | Uninduced | 0.228 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 50.279 |
| SRR8400027 | Control - Root | 51.771 |