Gene detail

Gene detail information of Glyur000258s00015263.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G29200.1	1.00E-102	chorismate mutase 1
NR	XP_003543874.1	0	PREDICTED: chorismate mutase 1, chloroplastic-like isoform 1 [Glycine max]
Swissprot	tr\|P42738\|CM1_ARATH	3.00E-143	Chorismate mutase 1, chloroplastic (Precursor)
trEMBL	tr\|I1LWP2\|I1LWP2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G05830.1}

Sequence

Transcript Sequence

>Glyur000258s00015263.1
TTCTCCATTTTGATATTCCATCTACATTTCAACATTCCACACCTAACTATTACGCATTACTCTTTTCCCATTGAGTTGAATCAATCCCTCCCTCCCTCACCAACCGTTACCATAGCCGTCAAAACTGCACCATAGTACACACACTTTTTTTTTTTTTCTGTTCTGTTTGGTTTGGTTTCTTAAACTGTTNATGCTTCTTCTCTCTTTCCCAATTCTCTCTCTTTCCCTTCTCTTGTTTTCTCTCGTTCGTTCCTATGGAGGCTAAGCTTCTAAGAGCTACTATTCCTTCCTTCACAGTGCCTCCAACACCCTCTCGTCCCTTTCATCTCACAACTCAAAGGGCTTCCTTTCCCTTCAACCCCACTTCATATTTCGCCCCAAAATCCAATCTTTCTCTAAGGCCAAACGCTGCTTCTATTGGGTCAGTGCCAATAAAGAAAAGGATTGATGGGAGTGAAAATTTGACCCTTGATCACATAAGACATTCTTTGATTCGTCAAGAGGATAGCATAATCTATAACCTCTTGGAGCGAGCACAGTATTGTTACAACGAAGATACATATGACCCTGATGCCTTCTCTGTGGATGGATTCCATGGCTCCTTGGTAGAATACATGTTTCGGGAAACTGAGAAGCTTCATGCCAAGTTTGGTAGATACAAGAGCCCTGATGAGCATCCATTCTTTCCTGATGACCTACCGGAACCAATGTTACCGCCTTTGCAATACCCTCAGGTATTGCACCCTATTGCTGATTCAATTAATATAAANGATAAAGTGTGGGGTGTATACTTCAGAGTTCTTATCCCACAATTAGTCAAGGAAGGAGATGATGGTAATNCTGGATCCACTGCTGTTTGTGATGTAATGTGCTTGCAGGCTCTCTCAAAGAGAATCCATTATGGCAAATTTGTAGCTGAGGCAAAATTTCAAGCTTCTCCAGATGCATATAAAGCTGCNATTATAGCACAGGATAAGGATAAGTTGATGGAATTGCTAACATATCCTGAAGTTGAAGAGGCAATTAAAAGGAGAGTGGAGATGAAGACAAAGACTTTTGGGCAAGAAGTGGTTATAAACATGAAGGAACATCGAACCGAGCCTGTGTACAAAATAAATCCAGGCTTGGTTGCTGATCTGTATAGTGATTGGATCATGCCATTGACAAAGCAAGTTCAAGTTGCATATTTATTGAGGAAGCTGGACTGAACATAACACCTACCCTATTTTCAATTACAATGTTCATAAAGTATTCATCATCTTTTCCAATTTATGATTCTTGCAATGAATGTCTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00258	110415	115589	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01850	E5.4.99.5	EC:5.4.99.5	Biosynthesis of amino acids	map01230
			Phenylalanine, tyrosine and tryptophan biosynthesis	map00400

Gene Ontology

biological_process

GO:0009073 aromatic amino acid family biosynthetic process

GO:0046417 chorismate metabolic process

molecular_function
GO:0004106 chorismate mutase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000258s00015263.1	PF01817.16	CM_2	76	143	1.20E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	34.610
SRR1783600	control	34.763
SRR1783602	moderate drought stress	21.045
SRR1811619	moderate drought stress	20.654

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.282
DRR006520	Root Summer glycyrrhizin high producing strain	16.068
DRR006521	Root Winter glycyrrhizin high producing strain	4.133
DRR006522	Root Winter glycyrrhizin high producing strain	3.842
DRR006523	Root Summer glycyrrhizin low producing strain	15.858
DRR006524	Root Summer glycyrrhizin low producing strain	15.983
DRR006525	Leaf Summer glycyrrhizin high producing strain	26.866
DRR006526	Leaf Summer glycyrrhizin high producing strain	26.784

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	52.021
SRR2868004	Drought Stress (root)	56.350
SRR2967015	Control (root)	47.929

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	50.263
SRR9715740	Leaf	31.291
SRR9715741	Leaf	54.684
SRR9715739	Root	9.182
SRR9715742	Root	23.488
SRR9715743	Root	21.875

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	25.799
SRR8749028	MeJA induced 9h	32.474
SRR8749029	MeJA induced 9h	17.201
SRR8749030	Uninduced	73.916
SRR8749031	Uninduced	66.197
SRR8749032	Uninduced	24.358

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	63.070
SRR8400027	Control - Root	59.123