Gene detail information of Glyur000258s00015248 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G01050.1 | 2.00E-36 | membrane-anchored ubiquitin-fold protein 1 precursor |
| NR | NP_001239615.1 | 4.03E-67 | uncharacterized protein LOC100802048 [Glycine max] |
| Swissprot | tr|Q75GT2|MUB1_ORYSJ | 3.00E-48 | Membrane-anchored ubiquitin-fold protein 1 (Precursor) |
| trEMBL | tr|C6TMK1|C6TMK1_SOYBN | 2.00E-67 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G03476.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00258 | 23886 | 27433 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000258s00015248.1 | PF13881.1 | Rad60-SLD_2 | 15 | 124 | 3.90E-42 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.141 |
| SRR1783600 | control | 3.058 |
| SRR1783602 | moderate drought stress | 5.015 |
| SRR1811619 | moderate drought stress | 5.477 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.612 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.929 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.445 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.041 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 19.679 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 20.838 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.114 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.709 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 24.595 |
| SRR2868004 | Drought Stress (root) | 34.868 |
| SRR2967015 | Control (root) | 32.752 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 18.806 |
| SRR9715740 | Leaf | 22.241 |
| SRR9715741 | Leaf | 33.329 |
| SRR9715739 | Root | 1.842 |
| SRR9715742 | Root | 5.348 |
| SRR9715743 | Root | 3.561 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.034 |
| SRR8749028 | MeJA induced 9h | 8.098 |
| SRR8749029 | MeJA induced 9h | 4.805 |
| SRR8749030 | Uninduced | 13.627 |
| SRR8749031 | Uninduced | 4.716 |
| SRR8749032 | Uninduced | 4.857 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.520 |
| SRR8400027 | Control - Root | 13.165 |