Gene detail

Gene detail information of Glyur000257s00022036

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G58030.1	2.00E-99	cationic amino acid transporter 2
NR	XP_003525716.1	3.57E-176	PREDICTED: cationic amino acid transporter 2, vacuolar-like [Glycine max]
COG	NP_661816.1	8.00E-26	amino acid permease [Chlorobium tepidum TLS]
Swissprot	tr\|Q9ASS7\|CAAT2_ARATH	3.00E-131	Cationic amino acid transporter 2, vacuolar
trEMBL	tr\|I1K1U1\|I1K1U1_SOYBN	1.00E-176	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G11410.1}

Sequence

Transcript Sequence

>Glyur000257s00022036.1
AAAATTGATGACCAAAATGAGACGTTCTAAAATTGTGAGACCAAAAACGAACATTGACATATTTACGAGTACTAAATACATATTTAACTTGATGATAATAATGTCATGACGTTTCACCATGCAACTTACCCTTTCTGGATTATCTAATGTACATAAGAGGTTGTTCAAACTTCTTAATAGTTGTTTTGCTTTGATCAACAGGTGAAAAATCCTCAAAGAGATTTGCCACTGGGAATTGGTGGTTCACTGTTTCTATGTTGTGGATTGTATATGATGGTCTCCATTGTTGTTGTTGGTTTAGTACCTTATTATGCTATCAATCCTGACACNCCCATATCCTCTGCATTTGCTGACAATGGGATGCATTGGGCAGCATACATTATAAATGTTGGTGCTTTTACAGCTCTATGCTCATCATTGATGGGAGGAATATTACCCCAGCCAAGAATTTTGATGGCTATGGCAAGGGATGGGTTGCTGCCACCATTTTTTTCTGACATAAGTAAGCATAGCCAGGTTCCTGTCAAGAGCACAATAGTTACTGGCCTTGTAGCTGCACTCTTGGCATTTTTCATGGATGTTTCTCAACTGGCTGGGATGGTTAGTGTGGGTACACTTCTTGCATTCACCATAGCAGCAATATCTGTGTTGATACTTAGATATATCCCACCAAATATGGTTCCATTGCCCCCTTCTCTCCAAGAACCAATTGATTCAACATCAGTGAAGTATGATTGGAGCCATTTGGAGACAAATGAAAAAGATGCAAAGGCAAATGTTGGTACTTATGGGAAGAAGAAACCCTTACTTGTTAAAGAGGATGCATCAATTGAGTATCCCCTTATTCCCAAACATCTTGCCATAGGCAACTATGTACATGAAGGTAATAGGCGAAAATTAGCTGGCTGGGTAATAGCATTCACATGCTTAGGAGTGTTTGTTCTTACATATGCAGCTTCTGATATAAATCTTCTCAGTTCTATTCGCTTTACATTATGTGGAGTTGGAGGCGTTCTTCTTTTGTCTGGTTTCACATGCCCATTTGTGCCTCTGCTACCTATAGCTTGCATTCTCATCAATTCCTATTTACTTATTAGTCTTGGGTCTGCAACTTGGGCACGTGTTTCAGTATGGCTAGCCTTAGGAGTAATAGTTTATGTATTTTATGGTCGAACCCATAGTTCTCTAAAAGATGCAGTTTATGTACCGGTTACTCAAGTGGATGATGATACCTATTACACCACCACAAGCTCTCTTGCTTAATAATCTCCATGCACATGTGGAGAGCTTATACATATGTTGCCCCAAGCCAAAGGAAAATTGCCACTACGCTTGTTTGTGGTGTATTATTTAATCGTTGTACAGGAAATGCATAAGATTTGTGATTTAGGTCATAGCTTGGTATCCTTTTTTTATGTGAAAAGATGTATCTTGTAAGGAAGAATATGGGAGTATATATTTGTCAAAAAAATATATGAGAGCATATTTGTTGATTGAAAGAACAATAGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00257	222762	228147	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0003333 amino acid transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0015171 amino acid transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000257s00022036.1	PF13520.1	AA_permease_2	1	134	7.30E-17
Glyur000257s00022036.1	PF13906.1	AA_permease_C	254	304	2.40E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.157
SRR1783600	control	21.545
SRR1783602	moderate drought stress	20.383
SRR1811619	moderate drought stress	19.965

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	22.650
DRR006520	Root Summer glycyrrhizin high producing strain	22.829
DRR006521	Root Winter glycyrrhizin high producing strain	0.295
DRR006522	Root Winter glycyrrhizin high producing strain	0.161
DRR006523	Root Summer glycyrrhizin low producing strain	134.089
DRR006524	Root Summer glycyrrhizin low producing strain	133.294
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.714
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.630

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	112.862
SRR2868004	Drought Stress (root)	164.254
SRR2967015	Control (root)	121.588

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	41.547
SRR9715740	Leaf	40.155
SRR9715741	Leaf	44.682
SRR9715739	Root	9.158
SRR9715742	Root	14.698
SRR9715743	Root	15.303

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.034
SRR8749031	Uninduced	0.049
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	49.303
SRR8400027	Control - Root	49.694