Gene detail

Gene detail information of Glyur000257s00022035

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G16715.1	ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases
NR	XP_004489655.1	PREDICTED: valine--tRNA ligase-like [Cicer arietinum]
COG	YP_005443420.1	valyl-tRNA synthetase [Caldilinea aerophila DSM 14535 = NBRC 104270]
Swissprot	tr\|P93736\|SYV_ARATH	Valine--tRNA ligase
trEMBL	tr\|A0A072U849\|A0A072U849_MEDTR	Valyl-tRNA synthetase/valine-tRNA ligase {ECO:0000313\|EMBL:KEH25556.1}

Sequence

Transcript Sequence

>Glyur000257s00022035.1
CCATGCAGGATATTATGGTTAGGTACAATCGCATGAAGGGAAGGCCAACACTTTGGCTTCCTGGGACTGATCATGCTGGTATTGCAACTCAGTTGGTTGTTGAAAGAATGCTAGCTTCTGAAGGAATAAAAAGGGTTGAAATGGGTAGAGATGAATTCACAAGAAAAGTTTGGCAGTGGAAAGAGAAATATGGGGGAACTATCACAAATCAGATCAAGAGACTTGGTGCTTCTTGTGATTGGTCTAGAGAGCACTTCACCCTTGATGAACAGCTAAGTCAAGCTGTAGTTGAGGCATTTGTTAGGCTTCATGAGAAAGGCTTGATTTATCAAGGTTCATATATGGTGAACTGGTCACCAACTCTACAGACTGCTGTCTCTGATTTGGAAGTTGAATATTCAGAAGAGTCTGGATATCTGTATCATATCAAGTATCGCATTGCTGGAGGTTCGAGGAGTGANTGGCTGACTGTAGCAACGACACGTCCAGAGACTTTATTTGGTGATGTAGCGCTGGCAGTTAATCCACAGGATGATCGTTATTCCAAGTATATCGGTCAGATGGCAATTGTNCCTATGACTTTTGGCCGTCATGTTCCTATCATTTCTGACAAGCATGTTGATAGAGAGTTTGGAACTGGAGTATTGAAAATTAGTCCAGGACATGATCATAATGACTATCTACTTGCTCGAAAGCTTGGTCTTCCAATACTGAATGTGATGAATAAGGATGGAACACTAAATGACGTTGCTGGCTTGTACAGTGGCCTTGATCGATTTGAGGCTCGAAAGAAACTGTGGGCAGAGCTTGAGGAAACAGGGTTAGCCGTGAAAAAGGAACCACACACTTTACGAGTACCCAGATCTCAGCGTGGTGGAGAAGTGATAGAGCCACTTGTTAGCAAGCAGTGGTTTGTAAGTATGGAGCCTCTTGCTGAGAAAGCTCTTCAAGCAGTTGAAAAAGGAGAGCTGACCATAATTCCGGAAAGATTTGAGAAGATTTACAACCATTGGCTTTCAAACATTAAGGATTGGTGTATAAGCAGACAACTATGGTGGGGACACCGGATACCTGTTTGGTACATNGTTGGAAAAGACAATGAAGAGGACTATATAGTTGCTAGGAATGCTGATGAAGCACTTGAAAAAGCTCACAAGAAATATGGAAAGGATGTAGAAATATATCAGGATCCTGATGTTCTTGACACTTGGTTTTCAAGTGCGCTATGGCCTTTTAGTACGCTTGGATGGCCAGATTTGTCTACAGAGGATTTTAAGAGGTTCTATCCAACTACAATGCTTGAAACCGGGCATGACATATTGTTCTTTTGGGTGGCAAGAATGGTGATGATGGGGATTGAGTTCACAGGGACTGTTCCATTTTCTTATGTTTATTTGCATGGACTAATCAGGGATTCACAGGGGAGAAAAATGTCTAAGACATTGGGGAATGTAATAGACCCTCTTGACACTATCAAAGATTATGGGACAGATGCGTTACGATTCACACTAGCTTTAGGAACAGCTGGCCAGGACCTGAATTTGTCCTCTGAGCGGTTGACTTCCAACAAGGCNTTCACAAACAAATTGTGGAACGCTGGCAAATTTATATTGCAGAACTTGCCTAAGGAGAATGATATATCTGCTTGGGAGAAAATATTGTCATATAAGTTTGACAGTGAAAAGTCTGTACTTAATCTTCCTTTACCAGAGTGTTGGGTGGTGTCAAAACTTCACTTGCTTATTGAATCTGTTAGTGCAAGCTATGACAAATTTTTCTTTGGAGAAGTGGGAAGAGAAACATATGATTTCTTTTGGGCTGATTTTGCTGATTGGTACATTGAGGCTAGCAAAGGGAGGCTTTACCACTCTGGAACTGGAGGCAAATCAGTTGCTTCAGTGGCACAGGCTGTTCTATTGTATACTTTTGAGAACATACTCAAAGTGCTGCATCCTTTCATGCCATTTGTAACTGAGGAGCTATGGCAGGTTAGAGCTATCAGGAATGCTCGGGCAGAATATTCTGTTGAGCCTGCAAAACGGATATCAGCATATGTGGTTGCAAGCAATGAAGTTATTGAATACATTGCTGAAGAAAAAGAGGTTTTAGCACTTCTCTCTCGGCTGGATTTACAAAATCTGCATTTTACGAATTCTTCACCAGGCACGATTTATACTAAATTTTGTACTCCCTGGTTGAAGACTGATATACATTTCCTTATCTGTAATGCAGATCAATCAGTTCATCTCGTGGCTGGTGAGGGACTAGAGGCATATCTCCCTCTGGCCGATATGGTTGATATTTCNGCAGAAGTTCAACGTCTTTCAAAGCGCCTTTCAAAGATGCAGAAGGAGTATGATGGATTGATAGCTAAACTCAATTCTCCTAAATTTGTAGAGAAGGCCCCAGAAGATGTGGTCCGTGGGGTGCAAGAAAAAGCAGCAGAAGCAGAAGAAAAGATCGCTTTAACCAAAAACCGCCTTGCATTCCTGAACTCTAATGCCCTNGTTTCAAAATAAGCTTGTCCAGGGTTACCGCTTCATTACCCGTTCCGNCTAAATGCATATCATATCAAATGTTTGTTGCCTGTTATGGTTAATCACATCTTCGCATCTATTTACTGTTGCAGTAAATGCCCTGTGCGGATCAGCAACATAAATCACAGCTCTTCTACTATGCTTCATCACAAGAGAACAAATTTTTCAGAATCGTGGTTGCTCTGGATCATTCTTTCAACTGTAGCCTTCTTTCTCTTGTGTAAGAAAAGCACAGTGAACTTAATCTTGCTAGAGGGATGAATGGGAAGTCTACATAGGATGCTGTCACCATGAGATGAGCTGTTTAGGAAAGTAGAGTTAGGTATTGCTAACTTTATTCAGCAGAAATTTCCCAAGAATGTTTCCCTCGGCCTAAATTATTTTGCTTGTGACTGACAGTTAACTGTGTTGGACCTCAATATTTTTTTATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00257	194121	213825	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01873	VARS, valS	EC:6.1.1.9	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

biological_process

GO:0006418 tRNA aminoacylation for protein translation

GO:0006438 valyl-tRNA aminoacylation

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0000166 nucleotide binding

GO:0002161 aminoacyl-tRNA editing activity

GO:0004812 aminoacyl-tRNA ligase activity

GO:0004832 valine-tRNA ligase activity

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000257s00022035.1	PF00133.17	tRNA-synt_1	1	515	2.70E-184
Glyur000257s00022035.1	PF08264.8	Anticodon_1	572	668	2.20E-29
Glyur000257s00022035.1	PF10458.4	Val_tRNA-synt_C	766	830	2.90E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.772
SRR1783600	control	3.892
SRR1783602	moderate drought stress	5.391
SRR1811619	moderate drought stress	5.399

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.425
DRR006520	Root Summer glycyrrhizin high producing strain	3.398
DRR006521	Root Winter glycyrrhizin high producing strain	3.282
DRR006522	Root Winter glycyrrhizin high producing strain	3.192
DRR006523	Root Summer glycyrrhizin low producing strain	3.799
DRR006524	Root Summer glycyrrhizin low producing strain	3.765
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.825
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.762

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.191
SRR2868004	Drought Stress (root)	6.569
SRR2967015	Control (root)	7.047

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.778
SRR9715740	Leaf	27.337
SRR9715741	Leaf	11.809
SRR9715739	Root	1.940
SRR9715742	Root	4.322
SRR9715743	Root	4.073

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.437
SRR8749028	MeJA induced 9h	4.719
SRR8749029	MeJA induced 9h	2.188
SRR8749030	Uninduced	1.498
SRR8749031	Uninduced	0.575
SRR8749032	Uninduced	0.745

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.030
SRR8400027	Control - Root	9.058