Gene detail

Gene detail information of Glyur000257s00022034

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G25010.1	5.00E-46	Aminotransferase-like, plant mobile domain family protein
NR	XP_004508894.1	5.91E-135	PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cicer arietinum]
Swissprot	tr\|Q9LNG5\|PPP7L_ARATH	8.00E-35	Serine/threonine-protein phosphatase 7 long form homolog
trEMBL	tr\|V7CPX9\|V7CPX9_PHAVU	1.00E-129	Uncharacterized protein {ECO:0000313\|EMBL:ESW31300.1}

Sequence

Transcript Sequence

>Glyur000257s00022034.1
TCTCTCTCTCTCTCTCTCTATTTTCTCTCTCCTCCCTCCACTCAAACCACCACCTTGTCTCTAATTTTCCGGCCCCACAAGCCACCGTCGCCGTGAACCGCCTCCGGCCGCCGTCGTAGCATCTCCCTCGCCGGCTGAACCAGTGGCTGGTCATCATCAAGGAATTTTGAGTTTGGAGGAGATCTTGAAAATTCAAAAATCAATATTAAATTCCNATGGCTGAAGAAGATTCAACACCGTTGCAGTCGCCACCGCAGTACCTAGAGGTGAATTGCGGGAGCTCCGGCAAGACCTATCGGTTCGCGGCGGGCACGGATGCGGGGTTCGCGGTGGNGCTGATAAATCGGAAGCTGAAGGGATCGGCAGCAACACACATAGAAGCAGTGAAGGNTGGCGAAGAACCAATTGCTTTTGGACCCAACGTGATTCTCTCTCATTTCGGTGAAGGTTGGAAGCTCCAAACACAACTCCTTCCTTCTGAAGAAGCGAGAAACGGACCAGTTCGAGGGATGGCAATGGACACACCTGGACTTGTTTCGGGCGTCCCAGGTGATGAAAAGAGGGTATCCAAGCAAATCAGNTCACTTGTAGATATGGTGCAATTTAGAGGTTTGCATACTGTGCACCGGAGACGCACAACATTTGCTCATAGAGGGCGTCTCGGTCTGAGGGAATCTCATGTTGAAGACCCACAGATTCAGGAGCCACCCCCTGAGGAGCAGCCACAACATGTGGAGGAGGTCGAGGCACGTACTGCTGATGGCCCGGCATTGCCACCTCCGTTTCTGGGAGGACCTGAGGATACCTCAATCCTTAGGTCCTTTGGGGACCATGTTGCCACATACCTATGGACTGGNCAGGATCGTGGTGCGTTGAAGGCGGTGGCCCATGGACGCAAAGTCAAAGACTCTGTGGTGATGAATGAGACAATACGCATCATTGTTGAGAAGTCAGGATTAGCCCCACTCTTGAGTTGTAGCCATTCCCAAACAGACAAGGGGCTCTGCTCTGCATTTGCTGAGAGATGGCACAAGGAGACGAACACATTCCACCTTCCTGTGGGGGAGATGACAATAACACTCGATGACGTCTCAGCCCTGTTGCACATCCCGATCACAGGTTCATTCTTCAGACAGCCAGTGATGGACCGAGACACCGCCAATGCTTGTTTGGTGCAGTTGCTCGGGGTTTNGTACGCCGATGCAGTGGAGGAGACGACCACAACGCGTGGAGCACACGTGCGTCTCGGGTGGCTGGAGACCGTGTACGAGGAGCNGTTTCAGCAGCAACACTGGGAGAATGCTGCAAGGGCTCTCCTGCTACGATTGGTCGGGAGCACGCTCTTTACGGACAAGAGTGCTACGTCTGTTGACGTAGCATTCTTGGAGCTATTTCGTGACCTGGACGCCTGTGGGACGTATGCATGGGGTGTTGGTGCCCTTGCATATTTGTATGACCAGCTCAGTATTGCCAGTTTTCATGGCACGAAGCAGCTCGCTGGCTACCTAACTCTCTTGCAGGGTTGGGTTTTTGAACATTTTCCAGCGATGGGGTGTCGTAGCTTGGACACAGACTACATTGAGGAGGCACCTCGGGCTAGTAGGTGGAGAGCTGGTAGGGGCCCAGGCCANGTCGTTGGCTATCGGACGGCCCTGGATGATTTGACGCTGGAAGACGTATGTTGGACCCCNTACACTGCTCACAGGGAAGCTCGTCCATTTCAGTTGATCTCCCTGTTCTCGGGATACATCCGGTGGGGCCCACTACATCATGTGCACCTNCCAGAGAGAGTGTTGAGGCAGTACNGGCACATGCAGTCGATTCCGCGANCGCCGCNCATTGTTACCAAGGTGCATACTTCCCATAAGCAGATGCACCACCGATGGGTGAATTATTTTGAGCACCTCGTCCCAGTTGCAGTCAGAGGAGATCAAGCGAGGCATCCTGGAGACTGCGTTGATGGATACTTAGAGTGGTTCTTCAGGATCTCGCACCCTTTCCTGATACCANCTCGTGCAGATATGCGACGTCGGGTGCTACTACCTCAGCCTGCTGAGGCTTCTTCCAATGGCACCTCCAGCCAGACCATGGAAGGATACGCGAGGATCAGTCAGATTCTACAATCATGCAAGGATAGAGGGTTGATTGTGGAAGGCACTGAGCTTTTGGACGCATTTGAAGAGTGTNTGCGTATAGCACATAGTCAACGTAGGGAGGGTCTGACCTACCAGAGGAAAAGGGTCAAGACACGCTCAGATGCATGATCTTTTTTTATTTTAGACTTTTACATTTTGGTACATGGGGACTTAGTTTGTATATTTTGGTACAAGTGAACGTAGGTTGTATATTTTGGTAATTCTATGGTATTTATTTTCTACGACCTCAAATTATTTCATAGTAACCACCGAGGGTTTAAGGTGAGATGGCATGGGTCTTTCTCAGATTAACCAGTGGTTCTGAGTTTGAATCTAGGTCATAGAAATATAGTAGCTTTAAATCTTGTGTGATAGAGCTTTGTTGCATATAGGGTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00257	185336	192889	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000257s00022034.1	PF10536.4	PMD	252	589	4.90E-63

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.359
SRR1783600	control	11.557
SRR1783602	moderate drought stress	28.326
SRR1811619	moderate drought stress	28.298

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	30.731
DRR006520	Root Summer glycyrrhizin high producing strain	29.963
DRR006521	Root Winter glycyrrhizin high producing strain	42.308
DRR006522	Root Winter glycyrrhizin high producing strain	41.382
DRR006523	Root Summer glycyrrhizin low producing strain	36.323
DRR006524	Root Summer glycyrrhizin low producing strain	36.426
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.989
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.736

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	34.673
SRR2868004	Drought Stress (root)	47.733
SRR2967015	Control (root)	51.989

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.766
SRR9715740	Leaf	14.623
SRR9715741	Leaf	22.476
SRR9715739	Root	17.979
SRR9715742	Root	20.691
SRR9715743	Root	18.887

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.095
SRR8749028	MeJA induced 9h	24.662
SRR8749029	MeJA induced 9h	15.736
SRR8749030	Uninduced	13.081
SRR8749031	Uninduced	5.133
SRR8749032	Uninduced	17.370

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	32.735
SRR8400027	Control - Root	27.066