Gene detail

Gene detail information of Glyur000257s00022033

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G27740.1	7.00E-173	ATPase family associated with various cellular activities (AAA)
NR	KEH25553.1	0	DNA replication factor C complex subunit 3 [Medicago truncatula]
COG	YP_003894183.1	7.00E-32	Replication factor C [Methanoplanus petrolearius DSM 11571]
Swissprot	tr\|Q8VXX4\|RFC3_ARATH	0	Replication factor C subunit 3
trEMBL	tr\|A0A072U8X4\|A0A072U8X4_MEDTR	0	DNA replication factor C complex subunit 3 {ECO:0000313\|EMBL:KEH25553.1}

Sequence

Transcript Sequence

>Glyur000257s00022033.1
GAAGCAGAGTGTGCGAGTGGTGTGTGTATATATAAAAAGGCTACAGTTTTCCCGCCACCACCATTGTTTAGAGAGACGACGCTGTGTGTGTGTGTGGAGTTTCAGTGACTGAAAAAAAGGGTTTGATAGAAGAAAGAGATGTTGTGGGTGGACAAGTATCGCCCCAAAACACTCGACAATGTTTTGGTCCACAACGACACCGCTCAAAATCTCAAAAAATTGGTNACAGAACAGGATTGCCCCCATTTGCTGTTCTATGGTCCATCTGGCTCTGGCAAGAAAACCCTAATCATGGCTCTTCTTCGCCAAATGTTCGGACCCGGTGCTGAAAAGNTCCCTCTTTTTTCTTTACTTTTGATTCCTTTTTCTAAAGTGTATGTGTTGATGTTTCAGGTGAAGGTGGAAAATAGGAATTGGAAAGTGGATGACATTGATTGTGTATCAGTGTATGCAGAGTTGTTGGTTTCTGTTGCTGGGAGTAGATCCATTGATTTAGAGCTGACAACATTATCAAGTGCCAATCACATTGAAATGACTCCAAGCGATGCAGGCTTTCAGGACAGATACATTGTTCAAGAAATAATCAAAGAAATGGCTAAGAATAGGCCCATTGATACTAAAGGGAAGCGAGGATTTAAAGTACTAGTGCTCAATGATGTTGACAAACTCTCTAGAGAAGCCCAACATTCTCTCCGCAGAACGATGGAGAAATACAGCGCTTATTGCAGATTAATTCTATGTTGCAATAGTTCTTCAAGAGTCACAGAAGCAATCCGCTCCCGTTGTCTTAACATACGAATAAATGCACCAAGTGAAGAACAGATTGTTGAAGTTATAGAGTTCATTGGTAAGAAAGAAGGGCTGCAACTTCCCTCTGGTTTTGCTGCTCGCATAGCAGAGAAATCAAATCGGAATTTAAGGAGGGCCATACTGTCCTTTGAGACTTGCCGTGTCCAACAGTATCCTTTCACTAGCAAACAAACAATTTCCCCAATGGACTGGGAGGAATATATTTCTGAAATTGCATCTGACATAATGAAGGAGCAGAGCCCAAAAAGGTTGTTTCAAGTTCGAGGAAAGCTGTATGAGCTGCTAATAAATTGCATTCCTCCTGAGATTATTTTGAAGAGGCTTCTTTATGAGCTATTGAGGAAGCTGGATGCAGAACTAAAGCATGAAGTCTGCCATTGGGCTGCATATTATGAACATAGGATGCGCCTTGGACAGAAGGCCATTTTTCACATCGAAGCATTTGTGGCTAAGTTCATGAGCATCTATAAATCCTTCCTCATTGCAACATTCGGCTGAGGCTTAGATGATAATTTGCTTTGCCGTGCTACATTTTAACTGTATTTTGTACTGGAAAGTAACTTCATACATGATGAGCTTTCTTTTCTCTCATGGTTTCTACCTAAGGTTTTCTCATATTGTATGCACAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00257	178390	183169	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006260 DNA replication

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000257s00022033.1	PF13177.1	DNA_pol3_delta2	19	223	1.00E-09
Glyur000257s00022033.1	PF08542.6	Rep_fac_C	287	376	1.20E-22
Glyur000257s00022033.2	PF13177.1	DNA_pol3_delta2	19	223	1.70E-11
Glyur000257s00022033.2	PF08542.6	Rep_fac_C	287	376	1.20E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.429
SRR1783600	control	14.489
SRR1783602	moderate drought stress	10.303
SRR1811619	moderate drought stress	10.068

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.365
DRR006520	Root Summer glycyrrhizin high producing strain	19.075
DRR006521	Root Winter glycyrrhizin high producing strain	29.234
DRR006522	Root Winter glycyrrhizin high producing strain	28.021
DRR006523	Root Summer glycyrrhizin low producing strain	14.078
DRR006524	Root Summer glycyrrhizin low producing strain	13.782
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.381
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.510

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	29.709
SRR2868004	Drought Stress (root)	27.873
SRR2967015	Control (root)	28.932

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.808
SRR9715740	Leaf	8.139
SRR9715741	Leaf	7.267
SRR9715739	Root	4.495
SRR9715742	Root	13.911
SRR9715743	Root	11.171

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	24.506
SRR8749028	MeJA induced 9h	18.432
SRR8749029	MeJA induced 9h	18.512
SRR8749030	Uninduced	3.933
SRR8749031	Uninduced	1.640
SRR8749032	Uninduced	1.365

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	34.191
SRR8400027	Control - Root	31.890