Gene detail

Gene detail information of Glyur000257s00022032

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G17860.1	2.00E-133	calcium exchanger 7
NR	XP_007151476.1	0	hypothetical protein PHAVU_004G049800g [Phaseolus vulgaris]
COG	YP_001530245.1	3.00E-11	CaCA family Na(+)/Ca(+) antiporter [Desulfococcus oleovorans Hxd3]
Swissprot	tr\|Q9FKP1\|CCX1_ARATH	0	Cation/calcium exchanger 1
trEMBL	tr\|V7C2F1\|V7C2F1_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW23470.1}

Sequence

Transcript Sequence

>Glyur000257s00022032.1
ATGGCACCTTTCACTTCCAACTCCAAAGCACAACACAGAAAACTCACTCTTCTCGTCAACACATCATTCCTCTTACTCCTCTTTCTTTCCCTCAAAGCCTATCTCAATCCTTCAAGTTCCAATTTTCATGCCACCTCCACAACTATCTTCAACCATGCTAGAATTCTGAGTAGTAGTGACATCAGAGTTGATGCTTGCACAGACCTTCACAAGTACTCAGATTACACCTCCAAGTGCATATATGTCAAAACCCATTTGGATTGCAGGTCCCAAGGGTACATAAACTACCTCCAAATCTTTTACTGCAACCTTGGCCATTCCTCAATTCTGGGACATACACTTCTTGTTCTGTGGCTTGTGGTGTTGTTCTATCTCTTGGCTGACACAGCTTCAAACTACTTCTGTTCTTCCTTAGAAGGCTTATCTGACATCTTGAGACTATCTCCAACCATAGCTGGGGTAACATTGCTCTCTCTTGGCAATGGTGCACCTGATTTCTTTGCAAGTGTTGTTTCCTTCACAGGTTCAAACAATGGTGCAGTTGGTCTCAATAGCATCTTAGGAGGTGCATTTTTTGTCTCCACTGCTGTTTTGGGGATCATAAGTTTCCTAGTTACCCCAAATGAGATTGAAGTTGACAAGGCCAGTTTCATAAGAGATGTCATTTTCTTCCTTTTCTCTCTCTTCATCCTCCTTGTCATCATTTCTATTGGTAAAATCACCTTGTTGGGTTCAATCTGCTATGTTTCCATCTATTTCCTTTATGTTTGTGCTGTTTCTGCCACACATTTCATCTATGGAGAGGAAAGGAATAAAGAAGTGGAATCTTCTTCACCATCTTCTGATGAGGATTTGGTAGAGTCTGGTAGTNTTAGTATACCATTGCTTGGCTATGTTGAAGATCATGAGAAACCAAATTTAGCAACAAATAAAGTTGGTGTTGAAGATGAGGAGAAGAAAAAGCAAGAGGGTTGTGCTTTTGGTATAAGTGATTCCTTTGATTGTACTACTTATTACTTGGGGAGGTTTCTGAAAGTACTAGAATTCCCTCTTTGTTTGCCAAGGAGACTAACTATCCCAGTTGTGAGTGATGACAAGTGGTCAAAGCCATATGCTGTTATATCTGTGACATTAGCACCAGTTTTGTTTGCAGCACTTTGTAACACCCAATTGGAAGAAGATTTGGGTTCAAAGAGTAGCCTAGTTTCATTTTTAATAGCTTCTTTAGTTGGCATTGTTTTTGGGAATATGGCATGTGTGACCACAAAGAGCACTAGCCCACCAAGGAAGTGCTTGTTCCCTTGGCTAGCAGGTGGGTTTTCAATGAGTGTGACATGGACTTATATCATTGCTGAGGAATTGGTTTCCCTTTTGGTTTCTATTGGGAACATCATTGGGGTTAGTCCTTCAATTCTTGGGTTAACTGTTCTTGCTTGGGGGAATTCTCTAGGGGATTTGATAGCAAATGGTGCAATGGCTAAGAATGGTGGGCCAGATGGGGCCCAAATTGCTGTCTCTGGTTGTTATGCAGGNCCAATGTTTAATCTCTTGATGGGCTTGGGCTTGCCTCTTGTTCTCTCAGCATGGGGTGAGTATCCTGATTCTTATGTCATTCCCAAGGACCATTACCTCTTGNGGACAATTGTGTTCTTGATGGGAGGGGTTCTTTGGGCCCTTGTGGTATTGTTGAAGAAGGATATGAGGCTTGGTAAGTTACTAGGGGCTGGGCTCTTAACCATATACCTCTGTTTTTTGTTTATAAGGATGGCCTTTGCAATTGGTGTTGTTAAATTATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00257	168679	170475	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000257s00022032.1	PF01699.19	Na_Ca_ex	129	258	1.50E-22
Glyur000257s00022032.1	PF01699.19	Na_Ca_ex	446	587	1.80E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.139
SRR1783600	control	5.077
SRR1783602	moderate drought stress	5.183
SRR1811619	moderate drought stress	4.997

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.388
DRR006520	Root Summer glycyrrhizin high producing strain	0.418
DRR006521	Root Winter glycyrrhizin high producing strain	0.994
DRR006522	Root Winter glycyrrhizin high producing strain	0.927
DRR006523	Root Summer glycyrrhizin low producing strain	0.501
DRR006524	Root Summer glycyrrhizin low producing strain	0.401
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.663
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.777

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.394
SRR2868004	Drought Stress (root)	0.453
SRR2967015	Control (root)	0.311

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.265
SRR9715740	Leaf	5.275
SRR9715741	Leaf	1.595
SRR9715739	Root	4.635
SRR9715742	Root	4.156
SRR9715743	Root	4.186

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.195
SRR8400027	Control - Root	3.397