Gene detail

Gene detail information of Glyur000257s00022031

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G17850.1	4.00E-96	Sodium/calcium exchanger family protein
NR	XP_004489652.1	0	PREDICTED: cation/calcium exchanger 2-like [Cicer arietinum]
COG	YP_001530245.1	1.00E-08	CaCA family Na(+)/Ca(+) antiporter [Desulfococcus oleovorans Hxd3]
Swissprot	tr\|Q9FKP2\|CCX2_ARATH	1.00E-158	Cation/calcium exchanger 2
trEMBL	tr\|A0A072U845\|A0A072U845_MEDTR	0	Cation calcium exchanger {ECO:0000313\|EMBL:KEH25551.1}

Sequence

Transcript Sequence

>Glyur000257s00022031.1
ATGATTGTTCACTTCCACACCCCAGAAGAAGAACTTGTTGTGGTTGTGAGAAACAACAACAACAACAACAACCACTCTTCCTTTGGTGATGATGGTGAACAAGAAGATTGCAAGGGATTATTAGACAACCTAGGTGGTGACTACAAAGCCAAGTGCTTTTACCTGAAATCCAATGACCCATGTGTCTCTCAGGGCTACATTGATTACCTTTACCTTTTCTATTGCAAAATTGGTAGATTCCCTCTATTGGGTNACACCCTCTTGTTCCTTTGGCTCCTAGTCCTGTTCTATTTGTTGGCTAATACAACCTCTGAGTACTTTTGTCCTTCTCTTGAGAGCTTGTCCAAGTTGCTGAGGTTGTCCCCNACAATTGCTGGGGTCACCCTTTTGTCTCTTGGCAATGGTGCCTGTGATGTTTTCTCTAGCCTTGTCTCTTTCCAGGGAAGTGGGACCCGCAGCATTGGCCTAAACACTGTTCTTGGGGGTGTTTCCTTTGTGTCCTGTGTTGTGGTTGGGATGGTTAGCATCTCAATTCGCCAGAGAGGGGTTCAGGTCATGAAGCATGCTTTTGTGAGAGATGTTTGTTTTCTCCTTTTGGTGCTTCTGTGCTTGTTTTGTGTTTTGATCGCCGGTGAGGTCAGCGTTTTTGGAGCAATTGGTTTTTGCTTCATGTATGTGGTGTATGTAGTTGTTGTTTATGTCTCTTCCACGCGATGGAAGGACGGTGACNGTGGTGGTGGTGATTCTGAAAGGGGTGGTATTGGTATTTCAAGTTATGGCAATGAATTGAGTTTGAGTTTAGGTGTGCCTCTTCTTAACGACATGAAGAAAGGATCCACCACTGATTGTGTTGAAAATGGTACTCAAGAATATGACTTGATAAACATCAAGAAAAATTGCTTCTGCTGCATGAGATCTTCANTATGTAGAGTTTCACTTTGTGTTCTTGAGATGCCCCTTTACTTGCCTAGGAGATTAACAATTCCTGTTGTCTCTGAAGAGAAATGGTCAAAACTATATGCAGTTTCTTCAGTGACATTAGCACCACTTCTCTTATCTGTCCTGTGGAATACTAACAACAAGGAAAACAGTTTGAGTTTCTTCATCAGCACAGACCTTATTGCTTATGGAATTGGATTGTTGGTTGGAATNGCATTTGGTGTAACTGCAATTCTNACAGCAGAAGTGTCAAGGCCACCAAAGAAGTGCTTATTTCCTTGGCTTGCAGGAGGGTTTGTGATGAGTGTGACATGGAGTTACATCATAGCTCAAGANCTTGTGGGGTTGCTGGTTTCAATTGGCTACATAAGTAGAATAAGCCCTTCAATATTGGGGTTAACAGTTCTTGCATGGGGGAACTCAATTGGTGATTTGATGACAAATTTAACCATGGCTTTANATGGTGGATATGAGGGTGCTCAAACAGCAATATCAGGTTGCTATGCTGGTCCTATTTTCAATACTCTAGTTGGATTAGGCCTTTCTCTTGTGACTTGTACTTGGTCTGAGTATCCACAACCTGTTTTGATCCCTAAGGATCCATATCTATGGGAGACATTGGTGTTTTTGGTGGTTGGGTTAGTTTGGGCACTTTTGGTTTTATTAAGGAGGGATATGAAGCTTGATGGACTCTTGGGTGGAGGGCTTTTGGTTATTTACTTCATTTCTCTGTTTCTCAGGCTGATTCAGACACAAGGGTATCTACAATTTGATGATTGGTATTCTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00257	157783	159510	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000257s00022031.1	PF01699.19	Na_Ca_ex	101	231	3.00E-20
Glyur000257s00022031.1	PF01699.19	Na_Ca_ex	418	559	2.00E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.360
SRR1783600	control	1.153
SRR1783602	moderate drought stress	0.646
SRR1811619	moderate drought stress	0.628

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.384
DRR006520	Root Summer glycyrrhizin high producing strain	14.087
DRR006521	Root Winter glycyrrhizin high producing strain	8.067
DRR006522	Root Winter glycyrrhizin high producing strain	7.572
DRR006523	Root Summer glycyrrhizin low producing strain	48.679
DRR006524	Root Summer glycyrrhizin low producing strain	48.677
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.917
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.779

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.126
SRR2868004	Drought Stress (root)	12.811
SRR2967015	Control (root)	13.248

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.529
SRR9715740	Leaf	4.973
SRR9715741	Leaf	2.101
SRR9715739	Root	1.051
SRR9715742	Root	5.380
SRR9715743	Root	4.133

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.057
SRR8749028	MeJA induced 9h	0.287
SRR8749029	MeJA induced 9h	0.070
SRR8749030	Uninduced	0.037
SRR8749031	Uninduced	0.035
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.105
SRR8400027	Control - Root	11.922