Gene detail information of Glyur000257s00022027 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G03680.1 | 0 | C2 calcium/lipid-binding plant phosphoribosyltransferase family protein |
| NR | XP_003550034.1 | 0 | PREDICTED: uncharacterized protein LOC100783437 [Glycine max] |
| Swissprot | tr|A0JJX5|SYT4_ARATH | 1.00E-05 | Synaptotagmin-4 |
| trEMBL | tr|I1MVS7|I1MVS7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G18260.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00257 | 126784 | 129825 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000257s00022027.1 | PF00168.25 | C2 | 10 | 96 | 2.70E-16 |
| Glyur000257s00022027.1 | PF00168.25 | C2 | 281 | 351 | 0.0014 |
| Glyur000257s00022027.1 | PF00168.25 | C2 | 437 | 521 | 2.90E-06 |
| Glyur000257s00022027.1 | PF00168.25 | C2 | 597 | 672 | 4.70E-13 |
| Glyur000257s00022027.1 | PF08372.5 | PRT_C | 858 | 1013 | 3.50E-67 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.399 |
| SRR1783600 | control | 0.432 |
| SRR1783602 | moderate drought stress | 0.435 |
| SRR1811619 | moderate drought stress | 0.409 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.497 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.408 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.363 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.691 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.325 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.335 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.815 |
| SRR2868004 | Drought Stress (root) | 3.780 |
| SRR2967015 | Control (root) | 4.643 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.416 |
| SRR9715740 | Leaf | 0.082 |
| SRR9715741 | Leaf | 0.338 |
| SRR9715739 | Root | 1.056 |
| SRR9715742 | Root | 0.649 |
| SRR9715743 | Root | 0.430 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.247 |
| SRR8749028 | MeJA induced 9h | 1.482 |
| SRR8749029 | MeJA induced 9h | 1.198 |
| SRR8749030 | Uninduced | 0.021 |
| SRR8749031 | Uninduced | 0.050 |
| SRR8749032 | Uninduced | 0.129 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.227 |
| SRR8400027 | Control - Root | 1.736 |