Gene detail

Gene detail information of Glyur000257s00022018.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G26010.1	8.00E-95	Peroxidase superfamily protein
NR	CDP11670.1	1.12E-146	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q93V93\|PER44_ARATH	2.00E-115	Peroxidase 44 (Precursor)
trEMBL	tr\|A0A068UT19\|A0A068UT19_COFCA	4.00E-147	Coffea canephora DH200=94 genomic scaffold, scaffold_58 {ECO:0000313\|EMBL:CDP11670.1}

Sequence

Transcript Sequence

>Glyur000257s00022018.1
ATGAAGCTCATCACNATCTTCATAATCTTGATCTTCTTCTGTTGTGTCCTTCCTTTCTTCGCATTGGCTGAACTAAGAATTGGCTTCTATAGCTCTAGCTGTCCAAGAGCAGAGTCAATTGTACGTGAGGTTGTGCAAAGGCATTTCAACAAGGATAGATCCATTGCTGGGGCCTTACTTCGCATGCACTTTCATGATTGCTTTGTGAGAGGTTGTGATGCTTCAATACTGATAGATTCCACCAGCACCAAGGGATCCGAGAAGAATGCAGGGCCAAACCAAACAGTNCGAGGATTCGAGCTCATCGACGAGGCCAAGAGTCTCTTAGAACAAGCTTGTCCTTCAACAGTTTCGTGTGCAGACATCATAACAATTGCCACCAGAGACGCAGTGGCATTGTCAAATGGACCAATCTACAACATCCCCACAGGGAGAAGAGATGGGTTANTCTCCGATCCCTCTACAGTGAACCTCCCTGGACCATTCTTCACCGTGTCACGTGCTCTCCAAAGCTTCATTTCAAAGGGGTTAACACTAGAAGAAATGGTTACCCTTTTGGGAGCACACACCGTTGGTTTTGCTCACTGCAGTGCCTTTCAAGAAAGGCTCTCGAGCTTCCAAGCTGGGAACCTTGACCCAACAATGGATCCTGNTTTGGATGCCACGTTGGTTCGGACATGTGGGTCATTTGCTAGGCCTGTGAGGGATGACCCTGTTGTGTTTTTGGACCAGCAATCACCTTCTGAGTTTGATAACCAATTCTACAACCAGATACTTGCGCGGAGAGGGGTGNTTCGGATCGATCAGGAACTTGCTATGGATCCACTTTCTGCAGAGTTGGTCTCAAAATTTGCAGCAGATAATGAAAGATTTCGGGTGAGCTTTGCAGATGCTATGGTGAAGATGGGAAGTATTGACGTTTTGGTTGGGAATGAGGGCGAGATTAGAAAGAATTGCAGGGCTTTTAATTTTCCATTTACCATACACACAAAAATGAAGATCATCACTATCCTTATAATCTTCTTACTATCATGTGTCTTTATTCCCTTTGCATCTTCGAGCCTAAGCGTTGGCTTCTATACCGATACATGTCCAATGGCAGAGGCTGTTGTAACCGACGTCGTTCAAAGGCATTTCACACAGAACATATCCATTACCGGGGGTTTGCTTCGTATGCACTTTCATGATTGTTTTGTTAGGCTTCCCGGGCCACAACTCAACGTGTCTGAGGCACTCCCATTCTTCACATCAAAAGGGTTCACACTTGATGAAATGGTTACCCTTATGGGAGCACACACGGTTGGTTTTTCTCATTGTAGCTTCTTTAAGGACAGGCTAGTAAAATCTGACCCAACAATGGATCCTTCTTTTCGTGTTGCATTGGAAAGGATATGTGGTAATTCATCATTGGGTGACCCTTCTACATTTTTGGATGCAACCACACCTTATTTATTTGATAGTCAATTTTATAGCCAAATACTTCAAAGGAGAGGGGTGCTTAACATNGATCAGCAACTGGCTCTTGACCCATCCACCAAAGTCTTGGTCTCAAGTTTTGCGAATGACGTGGATGGTTTTCAGAAGAACTTTGCAGATGCTATGATAAAGATGGGAAGCTTTGGTGTGTTGGTTGGAAATGAGGGTGAGATTAGAAAGAATTGTAGGGCTTTTAATTTTCCATTAGAGAATTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00257	47190	52994	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00430	E1.11.1.7	EC:1.11.1.7	Phenylpropanoid biosynthesis	map00940

Gene Ontology

biological_process

GO:0006979 response to oxidative stress

GO:0055114 oxidation-reduction process

molecular_function

GO:0004601 peroxidase activity

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000257s00022018.1	PF00141.18	peroxidase	41	287	5.60E-72
Glyur000257s00022018.1	PF00141.18	peroxidase	401	522	2.20E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.254
SRR1783600	control	0.259
SRR1783602	moderate drought stress	0.697
SRR1811619	moderate drought stress	0.673

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.063
DRR006520	Root Summer glycyrrhizin high producing strain	0.063
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.130
DRR006524	Root Summer glycyrrhizin low producing strain	0.129
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.054
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.054

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.522
SRR2868004	Drought Stress (root)	0.488
SRR2967015	Control (root)	0.091

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.000
SRR9715739	Root	0.087
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.808
SRR8749028	MeJA induced 9h	1.162
SRR8749029	MeJA induced 9h	1.108
SRR8749030	Uninduced	0.985
SRR8749031	Uninduced	0.399
SRR8749032	Uninduced	0.319

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.320
SRR8400027	Control - Root	0.370