Gene detail information of Glyur000256s00016265 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G47140.1 | 4.00E-45 | NAD(P)-binding Rossmann-fold superfamily protein |
| NR | KEH25441.1 | 1.36E-113 | short-chain dehydrogenase/reductase [Medicago truncatula] |
| COG | YP_004861824.1 | 2.00E-29 | short-chain alcohol dehydrogenase-like protein [Candidatus Chloracidobacterium thermophilum B] |
| Swissprot | tr|Q5C9I9|ISPD_MENPI | 8.00E-67 | (-)-isopiperitenol/(-)-carveol dehydrogenase, mitochondrial (Precursor) |
| trEMBL | tr|A0A072U7V7|A0A072U7V7_MEDTR | 5.00E-114 | Short-chain dehydrogenase/reductase {ECO:0000313|EMBL:KEH25441.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00256 | 168527 | 170169 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000256s00016265.1 | PF00106.20 | adh_short | 17 | 150 | 5.40E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.454 |
| SRR1783600 | control | 2.012 |
| SRR1783602 | moderate drought stress | 3.935 |
| SRR1811619 | moderate drought stress | 3.870 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.858 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.326 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.835 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.350 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 19.504 |
| SRR2868004 | Drought Stress (root) | 18.150 |
| SRR2967015 | Control (root) | 13.850 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.638 |
| SRR9715740 | Leaf | 0.780 |
| SRR9715741 | Leaf | 2.041 |
| SRR9715739 | Root | 5.292 |
| SRR9715742 | Root | 3.212 |
| SRR9715743 | Root | 3.624 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.098 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 1.875 |
| SRR8749031 | Uninduced | 1.991 |
| SRR8749032 | Uninduced | 2.742 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.552 |
| SRR8400027 | Control - Root | 4.632 |