Gene detail information of Glyur000256s00016264 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G47140.1 | 2.00E-42 | NAD(P)-binding Rossmann-fold superfamily protein |
| NR | KEH25441.1 | 1.18E-98 | short-chain dehydrogenase/reductase [Medicago truncatula] |
| COG | YP_008047229.1 | 7.00E-29 | short chain dehydrogenase/reductase family oxidoreductase [Spiribacter salinus M19-40] |
| Swissprot | tr|Q94K41|SDR3B_ARATH | 8.00E-51 | Short-chain dehydrogenase reductase 3b |
| trEMBL | tr|A0A072U7V7|A0A072U7V7_MEDTR | 4.00E-99 | Short-chain dehydrogenase/reductase {ECO:0000313|EMBL:KEH25441.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00256 | 163773 | 168515 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000256s00016264.1 | PF00106.20 | adh_short | 17 | 86 | 2.90E-12 |
| Glyur000256s00016264.1 | PF13561.1 | adh_short_C2 | 90 | 206 | 1.80E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.420 |
| SRR1783600 | control | 0.304 |
| SRR1783602 | moderate drought stress | 0.328 |
| SRR1811619 | moderate drought stress | 0.361 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.159 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.281 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 59.522 |
| SRR2868004 | Drought Stress (root) | 45.359 |
| SRR2967015 | Control (root) | 30.773 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.488 |
| SRR9715740 | Leaf | 0.428 |
| SRR9715741 | Leaf | 1.844 |
| SRR9715739 | Root | 0.480 |
| SRR9715742 | Root | 0.608 |
| SRR9715743 | Root | 0.286 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.071 |
| SRR8749030 | Uninduced | 2.464 |
| SRR8749031 | Uninduced | 3.037 |
| SRR8749032 | Uninduced | 3.329 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.997 |
| SRR8400027 | Control - Root | 2.238 |