Gene detail information of Glyur000256s00016260 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G27200.1 | 2.00E-41 | Cupredoxin superfamily protein |
| NR | NP_001237236.1 | 6.00E-80 | uncharacterized protein LOC100306337 precursor [Glycine max] |
| Swissprot | tr|P80728|MAVI_CUCPE | 6.00E-22 | Mavicyanin |
| trEMBL | tr|C6SYZ1|C6SYZ1_SOYBN | 2.00E-80 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G14800.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00256 | 145061 | 146409 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000256s00016260.1 | PF02298.12 | Cu_bind_like | 38 | 116 | 2.30E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.187 |
| SRR1783600 | control | 2.198 |
| SRR1783602 | moderate drought stress | 1.901 |
| SRR1811619 | moderate drought stress | 1.961 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 38.238 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 37.872 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 60.564 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 61.066 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 20.137 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 20.082 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 32.018 |
| SRR2868004 | Drought Stress (root) | 16.153 |
| SRR2967015 | Control (root) | 20.325 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.214 |
| SRR9715740 | Leaf | 0.261 |
| SRR9715741 | Leaf | 0.609 |
| SRR9715739 | Root | 2.224 |
| SRR9715742 | Root | 28.939 |
| SRR9715743 | Root | 24.083 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.272 |
| SRR8400027 | Control - Root | 12.079 |