Gene detail

Gene detail information of Glyur000256s00016258

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G40890.1	0	chloride channel A
NR	KHN01525.1	0	Chloride channel protein CLC-b [Glycine soja]
COG	YP_001866489.1	8.00E-24	Cl- channel voltage-gated family protein [Nostoc punctiforme PCC 73102]
Swissprot	tr\|P92941\|CLCA_ARATH	0	Chloride channel protein CLC-a
trEMBL	tr\|Q0IJ86\|Q0IJ86_SOYBN	0	Chloride channel protein {ECO:0000256\|RuleBase:RU361221}

Sequence

Transcript Sequence

>Glyur000256s00016258.1
ATGGGGGAGGAATCAAGTCTAGTTAAGGAAAACACATCAATCAATAATAGTTATGAAAACATGGAAGAGGAGGAAGAAGTACTTGAAGGAGTTGAGTTAGAAAGAGATCCAGAAAGGAATCCAATGAATGAGCCTCTCCTTCTCAAGAGGAACAAGACCCTTTCTTCCANTCCACTTGCCCTTGTGGGAGCAAAAGTTTCCTACATAGAAAGTTTAGATTATGAGATTAATGAGAATGATCTGTTCAAGCAAGATTGGAGGAGCAGATCAAGGGCTCAAGTGTTGCAATACATCATATTGAAATGGTCACTTGCATTCCTTGTTGGGCTTCTTACTGGGATTATTGCCACTCTCATCAACCTTGCTGTTGAGAACATTGCTGGGTATAAGCTTCTTGCTGTTGTTGATTACATCCAACAANAAAGGTACTTGACGGGTTTCCTATATTTCGGGGGCATGAATTTCATTTTGACATTCGTTGCTGCNATTCTGTGTGTCTGTTTTGCGCCCACAGCTGCTGGTCCTGGAATCCCTGAAATCAAGGCTTACCTTAATGGTGTTGATACTCCCAACATGTACGGTGCTACAACCTTGTTTGTTAAGATAATTGGAAGCATTGGAGCTGTTTCAGCAGGCCTAGATTTAGGAAAAGAAGGTCCATTGGTACACATTGGAAGTTGCATTGCTTCCTTACTNGGCCAAGGAGGCCCAGACAACCACAGGATCAAGTGGAAATGGTTGAGGTACTTCAACAATGACCGCGACCGCCGCGATCTCATAACATGTGGTGCTTCTTCCGGGGTGTGTGCGGCTTTCCGCGCCCCCGTCGGTGGTGTTTTGTTTGCCCTTGAGGAGGTTGCAAGTTGGTGGAGAAGTGCTCTCCTCTGGAGAACCTTCTGTAGCACGGCGGTGGTGGTGGTGGTGCTGAGGGCATTCATTGAGCTATGCCATGAAGGGAAGTGTGGACTATTTGGTGAAGGGGGTTTGATCATGTTTGATGTGGGCAGTGTCACTGTGAGGTACAATGTGATGGATATCATCCCTGTTGCTATCATTGGAATCATTGGTGGGTTACTAGGAAGTTTTTATAACTATCTTCTACACAAGATCCTTCGCCTTTACAATCTCATCAATCAGAAAGGAAAAATCTACAAGCTCCTCCTAAGTCTCTCTGTATCACTCTTTACCTCAGTGTGTCAATATGGTCTCCCATTCCTAGTAAAATGCACCCCTTGTGATCCNTCCCTTCTAGAATCTTCCATGTGCCCCACCAATGGTAGATCAGGAAATTACAAACAATTCAACTGCCCAAATGGTCACTACAATGACCTTGCCACACTACTTCTCACCACAAATGATGATGCTGTTAGAAACATATTCTCAACCAATACCCCAAATGAATACCAACCTCTCTCAGTCCTAATCTTCTTTGCACTCTATTGCATATTGGGACTAATCACTTTTGGAATTGCTGTCCCATCAGGGCTATTCCTACCAATCATACTCATGGGTTCAGGTTATGGCAGACTCCTAGGAATCATCATGGGACCCCACACAAACATTGATCATGGTTTGTTTGCTGTTCTTGGTGCTGCTTCCCTCATGGCAGGGTCAATGAGAATGACTGTGTCCCTTTGTGTGATTTTCCTTGAATTGACCAATAACCTTCTTTTACTACCAATAACCATGATTGTTCTCCTCATAGCNAAAACTGTTGGGGACAGTTTCAACCCNAGTATCTATGAGATCATATTGCATTTGAAAGGCCTTCCTTTTATGGATGCACAACCTGAGCCATGGATGAGGAATCTCTCAGTAGGTGAGCTTGTTGATGTGAAGTCATCAGTGGTTAGCTTTTGTGGGGTAGAAAAAGTAGCCAACATTGTAAATGCCTTGAGAAACACTACACACAATGGTTTCCCTGTGATGGATGGTGGTGGGGTAGAAGTGGAACCACCAACAGGAGTAATAGAACTACATGGATTGATTTTGAGAACACACCTTATTCAAGTGCTTAAGAAGAAGTGGTTCTTGAAAGAGAGAAGGAGAACCGAGGAATGGGAAGTGAGGGAGAAGTTTACTTGGGTGGAACTGGCTGAGAGAGAAGGGAATATTGAAGATGTGGCTGTGACAAAAGAGGAAATGGAGATGTTTGTTGATCTCCACCCTCTTACTAATACAACTCCTTTCACGGTGTTAGAGAGTATGTCGATAGCAAAAGCCAGAATCCTCTTCAGGCATGTATCTCCTGTAATTGGGATTTTGACCAGGCAGGATCTATTGGCCCACAACATTCTAACAGTCTTTCCTCACTTGGCAAAAACTAAGGGCAGAGAAAAGAAGAATTGAAGCTATGGTATTCATTGAATGGCCANGATGCTTTCTTGGGACAAGTCTACTTTATTCCACAAAATTTTNCCCCCTCTCAGTTTGGTGGTATTACTTTGGCCAATGCACAGAGAAAGAGGAGATATACAACAACAATGTTNAACTATATTCATATTTTCTTATTCTTTCCACAAAAGTTATATCAAGTGAAAGCAATAAAATTAGATTCATTTTCATACCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00256	136647	143608	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006821 chloride transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0005216 ion channel activity

GO:0005247 voltage-gated chloride channel activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000256s00016258.1	PF00654.15	Voltage_CLC	157	574	2.50E-89

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.754
SRR1783600	control	3.701
SRR1783602	moderate drought stress	5.859
SRR1811619	moderate drought stress	5.806

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.002
DRR006520	Root Summer glycyrrhizin high producing strain	5.119
DRR006521	Root Winter glycyrrhizin high producing strain	0.043
DRR006522	Root Winter glycyrrhizin high producing strain	0.042
DRR006523	Root Summer glycyrrhizin low producing strain	0.771
DRR006524	Root Summer glycyrrhizin low producing strain	0.774
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.114
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.094

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	83.535
SRR2868004	Drought Stress (root)	110.912
SRR2967015	Control (root)	129.539

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	44.381
SRR9715740	Leaf	52.793
SRR9715741	Leaf	55.796
SRR9715739	Root	6.880
SRR9715742	Root	7.620
SRR9715743	Root	7.641

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.117
SRR8749028	MeJA induced 9h	1.564
SRR8749029	MeJA induced 9h	0.447
SRR8749030	Uninduced	0.864
SRR8749031	Uninduced	0.491
SRR8749032	Uninduced	0.375

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.708
SRR8400027	Control - Root	16.243